genome.fa.s1737.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold127
Parameters: 2 7 7 80 10 50 1000
Length:  3416254

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  5  of  10  ( 1130 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1414190--1414488	50	5.7	50	79	10	305	24	29	20	26	1.99
1414191--1414484	106	2.8	106	81	9	307	24	29	19	26	1.98
1414190--1414481	156	1.9	156	89	1	460	24	29	19	26	1.98
1416043--1416193	4	37.8	4	98	0	293	50	25	0	24	1.50
1426018--1426354	159	2.1	159	95	1	597	37	16	8	37	1.79
1426217--1426362	49	3.0	48	80	6	188	37	15	8	39	1.77
1440916--1440946	13	2.4	13	94	0	53	61	16	6	16	1.54
1442933--1442970	17	2.2	17	90	0	58	34	34	21	10	1.87
1447286--1447809	127	4.2	126	89	1	716	30	16	21	30	1.96
1447812--1447852	22	1.9	22	95	5	75	19	0	34	46	1.50
1448400--1448442	18	2.4	18	84	0	59	46	9	27	16	1.77
1449246--1449283	20	1.9	20	84	10	51	55	7	2	34	1.43
1450454--1450530	11	6.9	11	70	24	63	44	3	27	24	1.71
1450454--1450530	33	2.3	33	82	10	102	44	3	27	24	1.71
1450912--1450970	17	3.4	17	69	17	57	38	1	1	57	1.19
1461393--1461451	17	3.4	17	69	17	57	38	1	1	57	1.19
1463878--1463917	18	2.2	18	86	0	53	25	5	0	70	1.08
1464016--1464065	22	2.4	21	81	12	59	16	6	4	74	1.17
1466814--1467667	426	2.0	426	100	0	1708	31	15	15	36	1.90
1470405--1470727	41	7.9	40	84	4	342	22	20	29	28	1.98
1470416--1470727	82	3.8	82	86	2	412	23	20	28	28	1.99
1470420--1470727	123	2.5	123	86	1	402	23	20	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1471090--1471131	15	2.9	15	89	3	59	28	0	33	38	1.58
1471090--1471136	14	3.3	15	85	8	62	27	0	31	40	1.57
1471123--1471195	21	3.5	20	79	7	65	21	0	43	34	1.53
1471152--1471189	14	2.6	15	87	8	60	15	0	52	31	1.43
1471159--1471189	7	4.3	7	95	4	53	12	0	58	29	1.35
1471251--1471306	25	2.3	25	84	6	80	35	0	1	62	1.06
1471461--1471498	14	2.7	15	84	12	53	26	2	28	42	1.69
1471538--1471587	12	4.2	12	75	14	59	34	6	6	54	1.50
1473022--1473066	9	5.1	9	81	5	56	48	0	2	48	1.13
1484339--1484369	11	2.8	11	90	0	53	32	0	0	67	0.91
1485749--1486029	101	2.8	102	91	3	426	27	15	27	29	1.96
1485749--1486037	51	5.7	51	80	6	336	27	15	26	29	1.96
1485854--1485935	26	3.2	26	65	22	64	26	12	28	32	1.92
1485753--1486041	152	1.9	152	84	5	388	27	15	26	30	1.96
1485756--1486074	101	3.1	102	86	3	279	29	14	26	29	1.95
1485756--1486074	152	2.1	152	81	5	378	29	14	26	29	1.95
1488858--1488902	22	2.0	22	100	0	90	37	8	17	35	1.81
1493378--1493465	45	2.0	45	90	4	142	34	21	17	27	1.95
1493465--1493662	51	3.9	51	80	5	231	29	26	17	26	1.97
1493472--1493661	101	1.9	102	84	3	249	31	27	16	24	1.97
1495501--1495525	12	2.1	12	100	0	50	32	8	32	28	1.86
1494686--1496358	854	2.0	854	99	0	3319	32	24	20	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1504454--1504489	18	2.1	18	89	5	56	8	16	16	58	1.61
1506508--1506565	22	2.8	20	72	10	62	39	22	3	34	1.71
1506795--1506853	31	1.9	31	92	0	100	50	8	18	22	1.73
1507719--1507773	26	2.2	26	81	12	62	34	5	5	54	1.46
1534198--1534743	44	12.7	43	70	13	252	27	23	20	29	1.99
1534545--1534663	45	2.7	44	80	13	145	26	26	21	26	1.99
1534118--1534754	217	2.9	216	89	0	968	27	22	21	29	1.99
1546996--1547042	22	2.1	22	88	0	67	48	4	0	46	1.21
1546982--1547036	22	2.3	25	76	20	64	50	5	0	43	1.25
1560285--1560918	114	5.6	114	92	0	1029	27	20	24	27	1.99
1560897--1560939	21	2.0	21	86	0	59	32	4	20	41	1.73
1561058--1561147	9	9.6	9	69	21	60	30	1	3	65	1.16
1561053--1561093	21	2.0	21	85	9	57	26	2	4	65	1.25
1561058--1561124	4	15.8	4	75	17	55	25	1	4	68	1.17
1565553--1565639	43	2.0	43	84	0	111	31	10	12	45	1.76
1566011--1566260	43	5.9	42	82	2	284	26	20	28	24	1.99
1566011--1566260	128	1.9	129	89	0	385	26	20	28	24	1.99
1566433--1566638	43	4.9	42	84	3	243	25	19	29	25	1.99
1566433--1566638	42	4.8	43	84	4	238	25	19	29	25	1.99
1566433--1566638	85	2.4	85	84	2	261	25	19	29	25	1.99
1568880--1568913	3	11.3	3	100	0	68	67	0	0	32	0.91
1574696--1574741	23	2.0	23	100	0	92	65	13	13	8	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1574897--1574947	23	2.2	23	92	0	84	41	21	9	27	1.84
1575403--1575434	12	2.6	13	85	14	50	31	0	6	62	1.20
1580419--1580558	59	2.3	60	80	6	160	25	12	13	48	1.78
1583028--1583585	94	5.9	93	80	3	532	25	20	18	35	1.95
1583112--1583534	44	9.1	44	64	19	135	25	19	18	36	1.95
1583028--1583585	188	3.0	188	85	2	676	25	20	18	35	1.95
1592588--1592648	29	2.1	29	96	0	113	29	16	22	31	1.96
1596399--1596444	23	2.0	24	95	4	85	45	13	4	36	1.63
1614199--1614236	15	2.5	16	83	12	53	26	10	0	63	1.27
1615544--1615581	5	7.6	5	100	0	76	60	0	0	39	0.97
1620036--1620069	17	2.1	17	88	5	52	52	5	17	23	1.66
1620191--1620233	14	2.9	15	86	10	54	39	6	13	39	1.72
1621661--1621733	32	2.3	32	85	0	101	52	17	4	26	1.63
1623166--1623208	21	2.0	21	86	0	59	48	11	4	34	1.60
1634260--1634305	18	2.4	20	85	7	60	47	13	8	30	1.72
1637982--1638026	15	2.9	15	81	12	54	24	4	2	68	1.19
1639661--1639718	25	2.2	25	85	11	73	60	6	3	29	1.39
1641502--1641621	51	2.3	49	83	8	141	45	7	20	26	1.78
1650240--1650291	24	2.2	24	92	0	86	34	1	7	55	1.39
1650423--1650457	16	2.2	16	89	0	52	45	5	8	40	1.58
1650952--1650998	23	2.0	23	92	8	78	8	4	34	53	1.51
1651020--1651354	126	2.7	126	85	2	460	28	15	22	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1656888--1656922	18	1.9	18	88	0	52	37	8	31	22	1.85
1658667--1658782	51	2.3	51	92	0	196	46	0	24	29	1.53
1658754--1658809	22	2.5	22	88	2	85	39	0	30	30	1.57
1659166--1659271	52	2.0	52	100	0	212	32	3	16	47	1.65
1660251--1660363	45	2.5	45	95	0	208	39	4	22	33	1.74
1664131--1664198	27	2.5	27	87	0	91	39	13	20	26	1.89
1664157--1664214	27	2.1	27	83	0	71	36	12	24	27	1.91
1665288--1665351	31	2.1	31	96	0	119	34	10	18	35	1.86
1667489--1667568	25	3.2	25	82	5	92	35	21	27	16	1.94
1669884--1669948	33	2.0	33	100	0	130	41	12	12	33	1.80
1684860--1684890	15	2.1	15	93	0	53	29	0	6	64	1.18
1690364--1690396	17	1.9	17	93	0	57	57	15	12	15	1.65
1703733--1703777	4	10.8	4	86	9	63	75	0	24	0	0.80
1703732--1703777	13	3.6	13	88	5	76	76	0	23	0	0.79
1704532--1704582	26	1.9	27	84	4	68	52	7	9	29	1.62
1707194--1707380	93	2.0	93	93	0	320	32	19	18	29	1.96
1709564--1709611	18	2.7	18	90	0	78	68	0	12	18	1.20
1709571--1709611	6	6.8	6	97	0	73	70	0	12	17	1.16
1730354--1730422	23	2.9	24	80	2	86	27	8	17	46	1.77
1733783--1733827	21	2.0	21	83	8	54	64	2	4	28	1.25
1736229--1736257	2	14.5	2	100	0	58	48	0	0	51	1.00
1737839--1737882	17	2.6	17	92	3	72	34	0	4	61	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1737914--1737947	18	1.9	17	88	5	50	35	2	11	50	1.54
1744597--1744660	32	2.0	32	87	0	92	21	31	15	31	1.95
1745257--1745333	40	1.9	40	86	0	109	35	10	9	45	1.70
1751604--1751820	42	5.2	42	80	7	217	47	17	20	15	1.83
1751616--1751820	84	2.4	85	84	7	267	47	17	20	14	1.83
1751702--1751822	21	5.8	21	64	3	64	47	18	18	16	1.84
1752013--1752104	45	2.0	46	83	6	116	45	13	2	39	1.55
1755110--1755203	31	3.2	30	66	17	70	22	28	18	30	1.97
1755118--1755206	27	3.1	27	67	17	72	20	29	16	33	1.95
1755120--1755212	26	3.3	26	68	16	69	20	30	16	33	1.94

Tables:   1   2   3   4   5   6   7   8   9   10