genome.fa.s1737.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold127
Parameters: 2 7 7 80 10 50 1000
Length:  3416254

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  2  of  10  ( 1130 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
339130--339213	43	2.0	43	90	0	132	35	21	14	28	1.92
343859--343940	28	2.9	29	75	17	98	34	20	25	19	1.96
348446--348492	23	2.0	23	91	0	76	42	27	10	19	1.84
349842--349926	43	2.0	44	90	2	136	28	16	24	30	1.96
357428--357514	43	2.0	44	90	2	140	27	16	25	31	1.96
368643--368667	10	2.5	10	100	0	50	88	0	12	0	0.53
385051--385091	17	2.5	17	84	11	50	26	17	9	46	1.79
387664--387709	24	2.0	23	83	12	58	6	4	30	58	1.43
398084--398130	20	2.4	21	82	10	55	27	10	4	57	1.51
406309--406371	30	2.1	30	90	0	99	28	1	11	58	1.41
406445--406596	74	2.0	75	98	1	297	44	0	4	51	1.22
406571--406604	12	2.8	12	95	0	59	70	0	0	29	0.87
414053--414204	74	2.1	74	86	5	209	26	23	19	30	1.98
418723--418748	11	2.4	11	100	0	52	23	0	0	76	0.78
420859--420898	18	2.2	18	90	0	62	57	35	0	7	1.27
425443--425479	3	12.3	3	100	0	74	32	0	0	67	0.91
425846--425913	31	2.2	31	91	0	109	27	17	25	29	1.97
425890--426015	58	2.2	58	81	2	146	39	15	23	22	1.91
426697--426724	13	2.2	13	100	0	56	21	7	14	57	1.61
426750--426820	3	23.3	3	97	2	133	32	1	0	66	1.01
430360--430430	36	2.0	35	83	10	90	36	2	5	54	1.38
441383--441450	31	2.2	31	86	0	91	29	19	23	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441988--442035	23	2.1	23	96	0	87	47	14	0	37	1.44
444417--444565	70	2.1	71	88	1	228	30	6	8	54	1.57
444448--444556	35	3.1	35	66	15	89	29	8	8	54	1.59
445680--445709	13	2.3	13	100	0	60	40	43	0	16	1.48
445850--445926	9	8.4	9	85	8	102	22	10	27	40	1.86
446364--446399	16	2.2	16	100	0	72	25	0	36	38	1.56
452047--452103	27	2.1	27	86	0	78	29	14	29	26	1.95
461615--461643	2	14.5	2	100	0	58	48	0	0	51	1.00
461830--461944	37	3.1	37	91	0	176	33	6	25	34	1.83
461830--461957	37	3.6	35	88	4	125	31	8	25	34	1.86
468426--468516	27	3.4	27	89	1	94	27	23	17	31	1.97
468440--468548	27	4.0	27	90	0	155	26	20	16	36	1.93
469362--469416	6	9.2	6	93	0	92	54	0	45	0	0.99
471539--471585	20	2.6	18	76	10	51	29	2	0	68	1.02
474885--474918	18	1.9	18	88	5	52	38	5	0	55	1.24
476572--476630	22	2.7	22	81	2	66	54	3	3	38	1.34
476923--476976	21	2.7	21	80	5	67	40	7	0	51	1.30
476923--476972	20	2.4	21	83	9	59	44	8	0	48	1.32
483726--485221	94	16.0	93	81	3	1538	26	20	19	33	1.96
491932--491964	16	2.1	15	94	5	57	69	6	6	18	1.30
493529--493563	17	2.2	16	90	10	54	28	8	17	45	1.77
499628--499654	11	2.5	11	100	0	54	33	25	7	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
502971--503200	123	1.9	124	83	2	302	31	25	16	26	1.97
506587--506767	44	4.0	43	72	18	118	26	20	19	32	1.97
506544--506914	94	4.0	93	79	4	372	27	20	19	33	1.96
514628--514677	24	2.1	24	92	0	82	66	4	8	22	1.35
519496--519634	40	3.5	40	79	6	149	12	14	27	45	1.81
521241--521354	43	2.7	43	76	13	108	23	17	28	30	1.97
534101--534239	73	1.9	73	83	5	183	28	30	1	39	1.66
535060--535098	13	3.1	13	88	3	53	48	0	5	46	1.24
549659--549688	2	15.5	2	93	6	53	50	0	0	50	1.00
561592--561686	26	3.8	25	81	13	106	22	24	20	33	1.97
561592--561686	49	1.9	49	83	12	124	22	24	20	33	1.97
568038--568071	7	5.0	7	89	3	52	55	41	2	0	1.15
570676--570709	15	2.3	15	89	0	50	47	5	2	44	1.42
573760--573803	23	1.9	23	85	0	61	63	6	4	25	1.38
580602--580666	33	2.0	33	87	6	96	38	1	23	36	1.64
580991--581029	20	2.0	20	89	0	60	28	10	15	46	1.78
588852--588945	45	2.1	45	95	0	170	35	12	17	35	1.87
589820--589845	4	6.5	4	100	0	52	26	0	0	73	0.84
597408--597561	49	3.1	49	78	9	159	42	12	14	30	1.83
598167--598297	50	2.6	51	83	8	176	38	12	15	33	1.84
598345--598404	30	2.0	31	87	9	88	53	11	8	26	1.65
600352--600377	5	5.2	5	100	0	52	42	19	19	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
600995--601027	16	1.9	17	88	11	50	42	0	30	27	1.56
601388--601422	9	3.9	9	92	0	61	28	11	14	45	1.79
602048--602100	23	2.3	23	78	12	56	67	1	3	26	1.17
602283--602322	15	2.8	15	79	20	50	40	2	0	57	1.12
608209--608247	17	2.3	17	86	8	53	48	0	38	12	1.42
611966--612248	43	6.6	43	79	6	245	31	25	20	23	1.98
613528--613604	21	3.7	20	80	11	66	64	6	2	25	1.30
615806--615848	7	6.1	7	86	0	59	27	48	2	20	1.62
615806--615848	21	2.0	21	90	0	68	27	48	2	20	1.62
616162--616205	14	3.1	14	83	0	52	31	38	2	27	1.69
616225--616257	14	2.3	15	94	5	59	36	33	0	30	1.58
616526--616786	41	6.4	42	90	1	309	29	26	19	23	1.98
616539--616790	82	3.1	81	87	2	353	28	28	20	23	1.99
616837--616959	40	3.1	39	78	3	120	21	21	19	37	1.94
630749--630798	19	2.7	20	81	12	70	54	0	6	40	1.25
630750--630788	10	3.9	10	83	10	53	51	0	5	43	1.24
631503--631622	62	1.9	62	96	0	222	30	4	14	51	1.60
633846--633875	6	5.0	6	91	0	51	33	30	16	20	1.94
637972--638024	26	2.0	27	85	10	74	32	24	18	24	1.97
648015--648107	44	2.1	46	89	4	145	37	29	4	29	1.76
648089--648141	16	3.3	16	89	0	79	26	32	3	37	1.74
655378--655414	15	2.4	16	91	8	60	48	5	0	45	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
663978--664018	21	2.0	21	85	0	55	39	9	4	46	1.58
666159--666243	36	2.3	36	95	4	152	61	5	12	20	1.52
666858--666920	33	1.9	33	87	3	92	39	4	19	36	1.72
671936--672074	21	7.0	19	69	12	75	62	2	4	30	1.26
671937--672014	30	2.6	30	78	6	95	61	2	2	33	1.23
672571--672626	25	2.4	22	85	11	76	26	5	0	67	1.11
672668--672723	20	2.7	21	86	5	69	30	1	3	64	1.21
672691--672753	20	3.2	19	82	10	65	26	0	6	66	1.15
672709--672753	10	4.5	10	81	10	56	26	0	8	64	1.23
680790--680973	20	9.2	20	64	13	83	38	17	30	14	1.89
680750--680854	40	2.6	40	83	5	115	35	18	32	14	1.90
680793--680987	40	4.9	40	82	1	221	38	15	29	15	1.89
680822--680981	80	2.0	81	91	1	259	38	16	29	15	1.89
691928--691952	13	1.9	13	100	0	50	56	0	0	44	0.99
691965--692011	23	2.0	23	84	8	60	34	8	31	25	1.86
693619--693651	6	5.5	6	100	0	66	33	15	33	18	1.92
699075--699117	22	2.0	22	95	0	77	34	20	9	34	1.85
705106--705131	13	2.0	13	100	0	52	23	0	0	76	0.78
705410--705514	44	2.4	44	79	6	115	31	23	14	30	1.94
705494--705606	44	2.6	44	77	2	120	19	28	19	32	1.96
708685--708747	32	2.0	32	84	6	83	7	11	12	68	1.40
713581--713630	24	2.2	23	85	7	66	54	8	4	34	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
716415--716447	15	2.2	15	94	0	57	69	0	15	15	1.19
718878--718992	31	3.7	30	82	4	131	27	24	2	45	1.66
720796--720835	17	2.3	18	80	20	50	20	30	0	50	1.49
721981--722120	31	4.5	32	85	3	162	30	10	15	43	1.80
722251--722366	43	2.7	43	87	0	169	32	16	27	23	1.96
738672--739993	661	2.0	661	99	0	2635	35	12	23	28	1.91
740870--741095	27	8.4	27	85	1	267	43	19	17	19	1.88
740869--741096	54	4.2	54	85	3	298	43	20	17	18	1.88
740869--741098	81	2.8	79	86	6	300	43	20	17	19	1.89
746582--746659	27	2.9	27	84	1	93	42	11	23	23	1.86

Tables:   1   2   3   4   5   6   7   8   9   10