genome.fa.s16.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397269.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_12.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5666189

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  11  of  14  ( 1598 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4212142--4212214	22	3.3	22	92	3	112	32	23	13	30	1.93
4212210--4212304	47	2.0	48	81	6	113	26	35	10	27	1.89
4214506--4214661	71	2.2	72	85	1	206	19	17	19	43	1.88
4225954--4225980	4	6.8	4	100	0	54	74	0	0	25	0.83
4232895--4232939	12	3.8	12	91	8	74	42	17	40	0	1.50
4235127--4235173	17	2.7	17	87	12	69	51	10	0	38	1.37
4238352--4238550	71	2.8	70	80	5	211	25	19	16	39	1.91
4242682--4242720	17	2.3	17	95	0	69	66	5	0	28	1.12
4248858--4249024	79	2.1	80	82	5	196	32	9	22	34	1.87
4255994--4256025	3	10.7	3	100	0	64	34	31	0	34	1.58
4258798--4258869	13	5.8	12	72	6	54	79	1	12	6	0.99
4263799--4263859	21	2.9	21	85	0	68	27	18	13	40	1.87
4266812--4267119	80	3.8	80	86	1	404	34	9	22	33	1.87
4271031--4271173	61	2.4	61	83	1	171	20	32	20	25	1.97
4275561--4275741	77	2.5	70	75	13	175	38	12	7	41	1.71
4275585--4275752	77	2.2	76	86	1	228	35	12	6	45	1.68
4275605--4275769	77	2.1	76	84	4	224	40	11	6	41	1.66
4277662--4277731	28	2.5	28	83	0	95	18	15	18	47	1.83
4278230--4278309	25	3.1	27	84	12	107	35	15	10	40	1.80
4280709--4280793	36	2.4	36	85	0	116	11	42	8	37	1.72
4280709--4280795	18	4.8	18	82	0	102	11	42	9	36	1.73
4280789--4280831	21	1.9	23	86	13	63	4	39	6	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4287348--4287389	15	2.9	15	85	3	59	71	0	0	28	0.86
4287350--4287419	20	3.5	20	75	12	72	74	2	0	22	0.95
4287351--4287435	7	12.8	6	74	19	55	72	2	1	23	1.03
4287347--4287435	20	4.5	19	71	22	67	71	2	1	24	1.04
4287820--4287867	15	3.2	15	75	0	51	35	22	8	33	1.84
4287965--4288001	6	6.2	6	100	0	74	64	0	0	35	0.94
4294024--4294056	16	2.1	16	88	5	50	21	9	9	60	1.54
4295656--4295694	15	2.5	15	83	4	51	53	5	38	2	1.37
4297720--4297773	28	1.9	28	85	7	74	33	3	1	61	1.25
4306140--4306286	73	2.0	73	98	0	285	29	8	23	38	1.84
4311370--4311408	21	1.9	20	89	5	60	33	23	20	23	1.97
4311319--4311469	72	2.1	72	83	2	187	41	18	19	20	1.91
4322423--4322504	32	2.6	32	86	1	103	31	20	24	23	1.98
4324072--4324118	19	2.5	19	83	10	62	36	27	10	25	1.89
4328905--4328930	2	13.0	2	100	0	52	50	0	0	50	1.00
4329792--4329842	26	2.0	26	100	0	102	23	11	17	47	1.81
4330115--4330191	21	3.7	21	71	3	75	38	11	16	32	1.85
4337423--4337484	29	2.1	29	90	0	97	41	20	3	33	1.69
4340138--4340181	2	22.5	2	95	4	81	0	50	0	50	1.00
4344237--4344270	18	1.9	17	88	5	50	41	0	0	58	0.98
4348441--4348482	21	2.0	21	90	0	66	33	19	11	35	1.88
4351554--4351793	120	2.0	120	90	2	385	29	12	24	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4353247--4353302	29	1.9	29	88	0	85	37	10	10	41	1.75
4355383--4355445	30	2.1	30	90	0	99	26	12	25	34	1.92
4355492--4355585	33	2.8	34	81	3	118	29	13	23	32	1.93
4360816--4360842	13	2.1	13	100	0	54	29	25	7	37	1.83
4364224--4364282	20	2.9	21	70	7	59	38	6	11	42	1.68
4371784--4371899	60	1.9	60	92	0	196	38	18	18	24	1.93
4377441--4377527	45	1.9	45	92	0	147	14	29	13	41	1.85
4406075--4406645	250	2.3	251	83	2	709	46	7	12	32	1.70
4407372--4407407	16	2.2	16	95	0	63	19	2	11	66	1.35
4408641--4408973	68	5.0	68	77	5	275	36	10	18	34	1.86
4408732--4408944	67	3.2	66	84	5	252	36	10	18	34	1.85
4412305--4412377	35	2.0	37	82	10	89	24	12	13	49	1.77
4412576--4412745	60	2.8	60	79	3	164	25	17	31	25	1.97
4413206--4413259	11	5.3	10	84	13	58	68	1	1	27	1.10
4413207--4413250	18	2.4	19	80	7	54	70	2	2	25	1.10
4416399--4416437	3	13.0	3	94	0	69	30	0	2	66	1.05
4416399--4416447	12	4.2	12	92	2	64	28	0	4	67	1.09
4417069--4417111	17	2.5	17	84	0	59	60	2	2	34	1.22
4419936--4419969	17	2.0	17	94	0	59	47	0	2	50	1.16
4420028--4420061	16	2.2	16	90	10	54	61	8	0	29	1.26
4420177--4420240	12	5.0	12	77	15	58	50	0	1	48	1.10
4422559--4422613	22	2.5	22	91	8	94	38	29	10	21	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4426131--4426577	23	19.4	23	79	0	327	22	29	31	16	1.96
4426152--4426577	46	9.3	46	80	4	394	22	30	31	16	1.96
4426152--4426577	69	6.2	69	80	1	433	22	30	31	16	1.96
4430210--4430415	31	6.7	31	87	2	263	37	20	20	20	1.95
4430226--4430399	61	2.8	62	86	1	251	39	20	20	20	1.93
4430210--4430398	92	2.0	94	87	2	274	38	20	20	21	1.93
4431037--4431145	46	2.4	46	89	6	159	20	32	32	15	1.94
4431037--4431145	23	4.7	23	83	2	139	20	32	32	15	1.94
4435531--4435571	17	2.4	17	83	0	55	60	2	4	31	1.30
4439138--4439180	20	2.2	20	100	0	86	51	4	23	20	1.66
4452671--4453217	47	11.7	47	77	5	349	26	15	31	26	1.96
4452839--4452912	23	3.2	23	71	17	80	29	20	31	18	1.97
4452859--4452935	24	3.2	24	70	17	70	24	16	33	24	1.96
4452671--4453193	139	3.7	140	78	5	430	27	15	31	26	1.96
4452851--4452927	24	3.2	26	69	17	74	27	16	35	20	1.95
4452671--4453211	186	2.9	185	85	3	676	26	15	31	26	1.95
4452671--4453193	94	5.6	92	74	7	394	27	15	31	26	1.96
4453184--4453241	24	2.5	24	77	2	64	18	17	31	32	1.94
4454542--4454742	31	6.5	31	88	0	258	36	21	20	20	1.95
4455293--4455349	24	2.4	23	82	2	69	24	28	22	24	2.00
4455320--4455804	47	10.4	45	75	7	305	26	30	16	27	1.97
4455391--4455515	23	5.3	23	63	17	69	23	32	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4455320--4455657	186	1.8	187	85	5	477	25	31	16	26	1.97
4455439--4455803	139	2.6	138	86	1	469	26	29	15	28	1.96
4455316--4455819	186	2.7	186	77	8	470	26	30	16	27	1.97
4462435--4462525	21	4.3	21	79	9	96	28	18	13	39	1.88
4462435--4462525	42	2.2	42	84	4	112	28	18	13	39	1.88
4464443--4464544	36	2.8	36	82	2	107	26	8	29	35	1.87
4464838--4464948	32	3.3	33	81	6	107	30	12	24	32	1.92
4468768--4468811	21	2.0	22	82	4	54	27	0	9	63	1.24
4477553--4477600	21	2.3	21	92	0	78	43	8	8	39	1.65
4477693--4477726	16	2.2	16	94	5	61	20	0	11	67	1.21
4478949--4479114	68	2.4	69	82	4	176	37	10	15	36	1.81
4481186--4481225	17	2.5	17	88	8	57	22	0	7	70	1.12
4482666--4482856	29	6.6	29	78	7	192	38	12	11	38	1.79
4493136--4493197	29	2.1	31	82	11	76	24	3	20	51	1.62
4496897--4496926	12	2.5	12	88	0	51	36	0	0	63	0.95
4499664--4499714	23	2.2	23	85	0	66	27	9	35	27	1.88
4499745--4499843	23	4.3	23	69	0	72	35	9	31	24	1.86
4499857--4499910	23	2.3	23	87	6	74	25	14	35	24	1.94
4499947--4500167	116	1.9	116	82	10	283	29	13	32	24	1.93
4500890--4500967	31	2.5	31	97	0	147	30	16	19	33	1.94
4506650--4507145	71	7.0	70	80	3	458	35	28	15	20	1.94
4506648--4507145	142	3.5	142	80	3	529	35	28	15	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4506648--4507145	213	2.3	213	83	2	590	35	28	15	20	1.94
4510536--4510588	22	2.3	23	80	3	63	32	15	15	37	1.88
4513100--4513150	26	1.9	27	92	4	86	62	0	37	0	0.95
4513119--4513174	15	3.6	16	75	18	55	67	0	32	0	0.91
4521890--4521950	19	3.4	18	70	16	56	37	0	1	60	1.07
4529121--4529149	13	2.2	13	100	0	58	37	13	20	27	1.91
4536098--4536132	15	2.2	17	90	10	56	31	0	2	65	1.07
4554203--4554227	3	8.3	3	100	0	50	64	0	0	36	0.94
4559176--4559325	74	2.0	74	85	0	201	43	15	22	18	1.87
4561253--4561318	18	3.6	18	91	2	96	57	0	3	39	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14