genome.fa.s16.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397269.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_12.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5666189

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  8  of  14  ( 1598 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2945319--2945359	21	1.9	22	85	5	57	7	34	24	34	1.83
2965429--2965991	281	2.0	281	90	1	878	41	19	12	27	1.87
2973592--2974663	252	4.2	252	83	6	1141	35	7	5	51	1.54
2974249--2974286	15	2.5	15	87	8	51	36	0	0	63	0.95
2989164--2989205	20	2.0	21	86	4	59	57	4	7	30	1.47
2994722--2995130	210	1.9	215	83	6	530	41	14	12	32	1.82
2996196--2996256	4	15.2	4	92	0	59	50	11	0	37	1.39
2996196--2996256	10	6.1	10	84	0	59	50	11	0	37	1.39
2996891--2996920	15	2.0	15	93	0	51	76	3	20	0	0.92
3014791--3014865	31	2.5	30	78	8	80	33	12	24	30	1.91
3016264--3016289	1	26.0	1	100	0	52	0	0	100	0	0.00
3018188--3018297	55	2.0	55	100	0	220	30	12	14	41	1.83
3029725--3029752	2	14.0	2	100	0	56	0	50	0	50	1.00
3030666--3030733	34	2.0	34	94	0	118	23	5	23	47	1.73
3034003--3034044	17	2.4	18	80	8	50	7	4	19	69	1.31
3035335--3035389	22	2.7	20	83	13	67	41	1	0	56	1.10
3038620--3038665	21	2.2	21	88	0	65	58	6	2	32	1.36
3043463--3043566	30	3.5	30	75	11	106	35	8	7	48	1.63
3047149--3047211	26	2.4	26	77	17	67	26	1	7	63	1.31
3047202--3047241	20	2.0	20	90	0	62	45	0	0	55	0.99
3047211--3047244	17	2.0	17	88	0	50	47	0	0	52	1.00
3059694--3059727	6	5.7	6	89	0	50	44	41	14	0	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3062653--3062721	28	2.4	28	82	2	84	62	13	1	23	1.39
3062783--3062821	3	13.3	3	84	15	55	69	0	2	28	1.02
3062783--3062821	17	2.2	18	95	4	71	69	0	2	28	1.02
3065398--3065459	12	5.2	12	92	0	79	40	0	9	50	1.35
3065430--3065459	4	7.5	4	92	0	51	30	0	20	50	1.49
3065434--3065468	16	2.2	16	89	0	52	31	5	17	45	1.71
3065423--3065472	20	2.5	20	86	0	73	36	4	14	46	1.63
3065395--3065452	4	14.5	4	96	0	80	43	0	6	50	1.29
3069492--3069525	2	17.0	2	100	0	68	50	0	0	50	1.00
3069807--3070060	49	5.2	49	88	3	368	23	22	16	36	1.94
3071839--3071873	14	2.6	14	90	4	54	17	5	5	71	1.25
3071992--3072128	40	3.5	39	70	8	127	26	14	19	39	1.90
3071999--3072247	76	3.3	76	87	0	318	25	15	19	39	1.91
3071992--3072247	36	6.7	40	66	17	132	24	15	20	39	1.91
3077406--3077437	11	2.9	11	100	0	64	43	28	9	18	1.81
3078578--3078602	2	12.5	2	100	0	50	0	0	48	52	1.00
3083486--3083545	22	2.7	22	94	0	102	51	13	0	35	1.41
3083486--3083556	22	3.2	22	88	4	72	54	12	1	30	1.46
3099234--3099268	17	2.1	17	94	0	61	17	20	11	51	1.75
3106287--3106333	22	2.1	22	96	0	85	31	14	19	34	1.92
3113068--3113114	21	2.1	21	81	14	51	48	0	4	46	1.21
3113084--3113126	21	2.0	21	81	9	50	51	0	6	41	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3116197--3116276	31	2.6	30	82	11	83	23	12	5	58	1.53
3117435--3117487	25	2.1	25	96	0	97	41	16	7	33	1.77
3117660--3117763	53	2.0	53	88	0	154	41	13	16	28	1.86
3117660--3117791	53	2.4	53	81	5	138	40	13	14	31	1.85
3118497--3118549	13	4.3	13	74	13	58	32	1	7	58	1.37
3119460--3119512	24	2.2	24	96	0	97	33	18	16	30	1.94
3129297--3129349	19	2.8	18	77	8	52	24	5	11	58	1.54
3135225--3135361	28	4.9	28	73	8	107	40	8	13	37	1.73
3135222--3135294	29	2.6	28	89	4	119	36	5	15	42	1.70
3137000--3137101	51	2.0	51	90	0	159	52	7	17	21	1.69
3137260--3137311	23	2.2	23	83	13	61	34	17	3	44	1.67
3137625--3137666	2	21.0	2	95	0	75	2	0	47	50	1.14
3139858--3139883	3	8.7	3	100	0	52	0	30	0	69	0.89
3140279--3140363	23	3.8	23	64	22	63	24	16	11	47	1.80
3154530--3154571	22	1.9	22	85	0	57	38	0	2	59	1.10
3158095--3158129	2	17.5	2	100	0	70	51	0	48	0	1.00
3181525--3181860	166	2.0	167	91	0	548	19	33	8	37	1.83
3184004--3184063	12	5.0	12	75	11	52	8	28	16	46	1.76
3187452--3187527	30	2.5	30	85	4	91	51	3	7	36	1.50
3208334--3208404	23	3.2	21	73	11	70	40	5	16	36	1.73
3224072--3224099	2	14.0	2	100	0	56	50	0	50	0	1.00
3229176--3229209	17	1.9	18	88	5	52	70	0	26	2	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3230449--3230489	21	2.0	21	85	9	57	46	12	4	36	1.63
3231893--3231934	19	2.2	19	91	0	66	45	0	35	19	1.50
3232157--3232190	16	2.2	16	90	10	54	55	14	11	17	1.68
3236367--3236438	25	2.9	25	66	6	65	38	13	9	37	1.78
3236549--3236685	53	2.5	53	83	7	157	30	13	15	40	1.86
3238304--3238418	38	3.0	38	79	2	115	30	15	20	33	1.93
3239544--3239593	22	2.2	23	86	10	68	36	2	16	46	1.58
3240086--3240121	13	2.8	13	95	0	63	47	22	5	25	1.73
3240903--3240927	6	4.2	6	100	0	50	68	0	0	32	0.90
3240897--3240957	26	2.3	27	78	10	65	60	9	0	29	1.29
3242950--3243091	58	2.4	58	81	6	169	30	26	16	26	1.97
3253382--3253413	2	16.0	2	100	0	64	50	0	50	0	1.00
3262951--3263020	28	2.5	28	80	2	77	61	11	1	25	1.38
3275132--3275158	7	3.9	7	100	0	54	44	14	0	40	1.46
3275228--3275269	19	2.2	19	95	0	75	42	11	16	28	1.84
3276721--3276873	63	2.4	63	79	6	150	45	19	13	21	1.85
3277368--3277452	35	2.4	36	86	9	113	35	10	21	32	1.88
3287967--3288005	13	2.9	15	85	14	50	61	2	0	35	1.10
3290329--3290417	29	3.1	29	100	0	178	40	10	6	42	1.65
3293058--3293088	2	16.0	2	93	6	55	51	0	48	0	1.00
3293058--3293086	15	1.9	15	100	0	58	51	0	48	0	1.00
3293076--3293145	35	1.9	37	88	5	108	48	17	24	10	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3293073--3293160	37	2.5	35	81	10	115	47	13	29	9	1.74
3298052--3298081	15	2.0	15	93	0	51	23	26	13	36	1.92
3305358--3305447	45	2.0	45	95	0	162	34	27	14	23	1.94
3306566--3306627	30	2.0	30	84	9	81	54	1	1	41	1.19
3308294--3308372	38	2.1	38	85	0	104	25	11	25	37	1.89
3308375--3308426	22	2.4	22	83	6	61	15	11	28	44	1.81
3308415--3308516	22	4.8	21	78	3	96	20	10	27	41	1.86
3308413--3308516	43	2.4	43	75	0	109	20	10	27	41	1.85
3312102--3312158	29	2.0	29	89	0	87	45	17	10	26	1.81
3313909--3313939	14	2.2	14	94	0	53	29	25	12	32	1.93
3315487--3315542	21	2.7	21	91	0	85	30	12	17	39	1.87
3315812--3315856	23	2.0	22	86	4	63	28	24	15	31	1.96
3315729--3316096	83	4.4	84	76	5	286	33	24	13	28	1.93
3315888--3315931	22	2.0	23	86	13	65	31	27	11	29	1.91
3316053--3316100	22	2.1	23	88	3	71	31	29	12	27	1.93
3317718--3317752	18	1.9	18	88	0	52	28	14	17	40	1.88
3320069--3320118	23	2.2	23	85	0	64	42	22	10	26	1.84
3320106--3320184	22	3.6	22	77	6	79	45	20	10	24	1.81
3320079--3320186	22	4.9	22	77	2	74	45	23	9	22	1.81
3320421--3320447	9	3.0	9	100	0	54	55	0	22	22	1.44
3320412--3320503	47	1.9	49	91	4	152	46	13	14	26	1.80
3324692--3324722	2	15.5	2	100	0	62	0	51	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3331993--3332041	23	2.1	23	92	0	80	32	24	14	28	1.94
3333260--3333309	22	2.3	22	82	6	57	48	12	8	32	1.69
3339027--3339063	2	18.5	2	100	0	74	48	0	0	51	1.00
3339590--3340271	357	1.9	356	87	3	996	41	14	9	32	1.78
3339977--3340948	429	2.3	429	84	3	1127	36	15	12	33	1.84
3340999--3341154	79	2.0	79	97	0	294	36	12	17	33	1.87
3345837--3345885	24	2.0	24	88	0	71	22	24	0	53	1.47
3351483--3352139	354	1.8	354	83	7	855	44	7	6	41	1.60
3355410--3355481	1	72.0	1	94	0	126	2	0	97	0	0.18
3366698--3366743	3	15.3	3	90	0	74	30	34	2	32	1.70

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14