genome.fa.s16.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397269.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_12.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5666189

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  2  of  14  ( 1598 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441825--441861	2	18.5	2	94	0	56	51	5	0	43	1.24
443020--443170	79	1.9	79	87	2	223	23	20	22	33	1.97
445519--445546	2	14.0	2	100	0	56	50	0	0	50	1.00
445828--445852	12	2.1	12	100	0	50	28	16	24	32	1.96
455398--455441	23	2.0	22	81	4	52	63	18	4	13	1.46
463144--463188	22	2.2	20	84	11	56	26	11	11	51	1.71
473882--473908	14	1.9	14	100	0	54	59	0	0	40	0.98
474860--474909	19	2.7	18	78	3	55	38	0	4	58	1.17
475073--475126	25	2.3	24	81	9	58	37	9	5	48	1.59
478420--478470	27	1.9	26	92	4	84	39	9	15	35	1.81
478804--479419	312	2.0	311	88	2	916	39	11	10	38	1.76
483845--483878	8	4.1	8	88	7	50	11	20	0	67	1.21
483844--483878	17	2.1	17	94	0	61	11	20	0	68	1.20
485377--485693	85	3.7	84	90	3	501	39	4	15	40	1.68
488459--488498	18	2.2	18	86	0	53	37	7	2	52	1.43
489015--489059	23	2.0	22	82	4	54	62	4	2	31	1.27
489252--489297	22	2.0	23	84	12	60	63	0	2	34	1.07
495228--495312	42	2.0	43	93	2	145	35	21	9	34	1.85
498706--498765	30	2.0	30	93	0	102	43	0	33	23	1.54
501029--501116	44	2.0	43	86	2	122	34	20	7	37	1.82
505889--505932	23	2.0	22	86	4	61	61	13	2	22	1.43
506050--506443	215	1.8	214	89	2	617	43	12	13	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
514579--514653	18	3.8	19	75	10	64	56	4	2	37	1.32
514610--514648	20	1.9	21	89	5	62	56	5	2	35	1.35
535501--535558	6	9.7	6	80	0	62	63	25	3	6	1.35
535501--535561	12	5.1	12	87	0	86	63	24	3	8	1.37
535501--535559	24	2.5	24	94	0	100	62	25	3	8	1.39
537980--538018	19	2.1	19	90	0	60	43	0	0	56	0.99
542390--542418	15	1.9	15	100	0	58	55	10	13	20	1.68
543680--543769	45	2.0	45	100	0	180	37	22	11	28	1.88
552357--552430	26	2.8	27	82	15	93	67	1	4	27	1.16
552757--552815	15	3.9	15	81	0	73	28	22	10	38	1.86
558730--559045	109	2.9	109	88	2	429	50	9	6	32	1.61
561414--561601	92	2.0	92	94	0	331	35	21	12	30	1.90
562749--562782	17	2.1	16	88	5	50	29	0	11	58	1.33
566124--566158	3	11.7	3	100	0	70	68	0	0	31	0.90
567850--567937	44	2.0	43	84	2	113	31	11	11	45	1.76
567917--567994	39	2.0	39	100	0	156	41	12	15	30	1.85
567917--567980	22	3.1	22	65	21	66	42	12	15	29	1.84
568130--568230	29	3.4	29	80	2	103	31	12	17	37	1.88
579032--579325	151	1.9	151	88	1	437	42	13	11	32	1.81
580036--580061	2	13.0	2	100	0	52	50	0	0	50	1.00
585076--585118	19	2.3	19	80	12	52	20	2	2	74	1.04
592218--592383	83	2.0	84	83	3	210	21	25	23	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
594796--594896	22	4.5	22	88	3	130	35	28	11	23	1.91
594921--594967	21	2.2	21	80	0	58	44	23	12	19	1.85
601945--601978	14	2.2	16	90	10	54	79	0	0	20	0.73
604806--604946	74	1.9	74	92	0	237	39	4	8	47	1.56
605031--605110	30	2.5	33	88	10	112	42	0	2	55	1.13
619373--619447	30	2.5	30	84	4	107	37	6	5	50	1.51
626303--626336	6	5.5	6	96	3	59	0	17	0	82	0.67
633752--633818	30	2.2	31	86	2	91	44	8	13	32	1.75
633766--633815	15	3.3	15	80	0	64	40	6	18	36	1.75
634142--634319	26	6.8	26	65	21	72	34	1	0	63	1.09
633965--634488	111	4.8	111	86	9	695	33	2	0	63	1.12
634152--634211	20	2.8	21	82	12	70	33	0	0	66	0.92
633965--634483	218	2.4	222	85	9	694	33	2	0	63	1.13
634360--634482	34	3.6	32	81	9	102	30	3	0	66	1.07
634031--634426	58	7.2	57	70	17	232	33	2	0	63	1.12
634343--634482	38	3.8	38	80	15	152	30	3	0	65	1.15
635362--635388	2	13.5	2	100	0	54	0	48	0	51	1.00
644440--644482	15	2.9	15	89	6	61	79	4	0	16	0.90
644456--644494	19	2.1	18	85	4	51	76	5	5	12	1.11
661111--661143	6	5.5	6	92	0	57	0	15	3	81	0.80
662233--662258	3	8.7	3	100	0	52	65	34	0	0	0.93
664196--664228	2	17.0	2	87	6	50	45	3	0	51	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
667163--667222	10	6.3	9	79	12	59	73	0	1	25	0.93
667163--667218	19	2.9	19	84	10	71	71	0	1	26	0.96
667175--667219	24	1.9	23	86	13	65	71	0	0	28	0.87
675766--675811	2	23.0	2	100	0	92	50	0	0	50	1.00
696436--696572	64	2.1	65	90	2	215	45	21	13	19	1.84
696550--697007	98	4.7	98	84	5	562	48	17	19	14	1.82
696550--697007	195	2.4	195	83	6	578	48	17	19	14	1.82
721431--721466	18	2.0	18	94	0	63	8	0	25	66	1.19
738310--738335	6	4.3	6	100	0	52	15	69	0	15	1.20
743322--743402	41	2.0	41	82	4	101	37	1	17	44	1.57
743982--744017	14	2.5	14	90	4	54	72	0	2	25	0.98
745197--745248	22	2.2	24	83	16	65	73	0	23	3	1.00
745256--745333	40	2.0	40	85	10	106	71	5	15	7	1.26
745302--745349	16	2.9	16	78	3	60	81	4	14	0	0.84
751513--751552	2	20.5	2	89	5	64	47	0	0	52	1.00
751864--751896	12	2.8	12	100	0	66	15	9	51	24	1.72
752536--752570	15	2.3	15	100	0	70	42	11	8	37	1.72
764604--764637	17	2.0	17	88	11	52	11	8	23	55	1.63
764963--765015	23	2.3	22	83	6	61	45	3	5	45	1.45
765339--765367	15	1.9	15	100	0	58	51	0	0	48	1.00
766821--766852	2	16.0	2	93	0	55	46	0	3	50	1.17
769850--769882	16	2.1	16	88	5	50	21	3	12	63	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
771305--771433	63	2.0	64	89	4	199	33	17	20	27	1.96
773513--773547	15	2.3	15	85	0	52	42	5	2	48	1.41
775869--775915	22	2.1	23	80	11	62	51	6	2	40	1.39
775881--775928	14	3.4	13	78	16	51	58	4	2	35	1.29
776437--776473	19	1.9	20	88	5	58	48	2	24	24	1.64
779289--779333	22	2.0	22	91	0	72	53	6	2	37	1.40
779882--779928	21	2.2	21	80	0	58	63	2	2	31	1.18
784768--784824	28	2.0	28	96	0	105	36	15	10	36	1.82
785306--785373	21	3.2	21	74	12	66	27	19	19	33	1.96
785344--785515	76	2.2	77	95	1	319	36	16	15	31	1.90
785515--785577	28	2.2	28	94	0	108	52	7	14	25	1.68
798865--798940	23	3.4	22	77	15	75	40	1	1	56	1.16
799148--799207	28	2.1	29	84	9	79	63	0	5	31	1.16
801743--801896	82	1.9	81	84	1	209	37	17	18	26	1.93
807464--807733	90	3.0	90	96	0	504	30	9	11	49	1.70
810425--810478	25	2.2	25	83	3	65	57	0	3	38	1.17
811099--811177	23	3.5	22	70	6	59	46	1	1	50	1.17
811253--811315	11	6.4	11	70	20	50	52	0	3	44	1.17
812110--812136	2	13.5	2	100	0	54	48	0	0	51	1.00
824593--824617	13	1.9	13	100	0	50	8	92	0	0	0.40
827828--827858	16	1.9	16	93	0	53	41	0	0	58	0.98
831392--831440	2	24.5	2	100	0	98	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
840693--840746	23	2.3	23	78	12	56	20	11	16	51	1.74
843916--843985	35	2.1	33	84	7	88	34	0	7	58	1.25
843955--844008	23	2.3	22	84	15	65	35	0	1	62	1.06
845848--845876	2	14.5	2	100	0	58	51	0	0	48	1.00
846848--846880	2	16.5	2	100	0	66	51	0	0	48	1.00
848658--848702	21	2.1	21	83	0	54	11	8	6	73	1.25
853010--853054	19	2.4	19	92	0	72	35	22	11	31	1.89
854793--854842	21	2.4	21	80	6	57	54	4	12	30	1.55
854919--855767	86	9.9	86	91	1	1289	39	7	7	44	1.61
854926--855767	343	2.5	342	90	3	1297	39	7	7	45	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14