genome.fa.s16.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397269.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_12.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5666189

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  9  of  14  ( 1598 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3368163--3368199	15	2.5	15	83	16	51	62	5	32	0	1.18
3372098--3372144	20	2.3	20	85	0	58	70	4	6	19	1.26
3380293--3380325	3	11.0	3	93	0	57	33	30	0	36	1.58
3383250--3383333	34	2.5	34	86	0	114	32	26	21	20	1.98
3384638--3384671	11	3.3	11	88	12	54	64	0	0	35	0.94
3392837--3392876	21	1.9	21	89	0	62	47	2	0	50	1.14
3395027--3395133	55	1.9	58	86	5	157	40	1	0	57	1.09
3395045--3395129	40	2.2	38	93	6	152	41	1	0	57	1.06
3394990--3395128	15	9.1	15	74	17	94	41	2	0	56	1.11
3395048--3395147	40	2.5	40	88	6	123	42	1	1	56	1.13
3395033--3395157	55	2.3	54	82	8	137	42	1	0	55	1.15
3395404--3395441	20	2.0	20	89	5	60	21	2	2	73	1.07
3395507--3395559	8	6.5	8	81	10	63	54	0	1	43	1.11
3395486--3395540	19	2.9	20	78	13	62	50	0	1	47	1.11
3395478--3395566	16	5.8	16	73	17	80	47	0	1	51	1.08
3399796--3399852	30	1.9	30	82	7	71	52	3	3	40	1.35
3403431--3403715	141	2.0	147	86	4	411	43	12	9	34	1.76
3406585--3406616	15	2.0	17	88	11	50	18	6	12	62	1.50
3409346--3409423	36	2.2	36	83	4	95	32	11	23	33	1.90
3411441--3411465	10	2.5	10	100	0	50	36	12	8	44	1.71
3422861--3422907	20	2.3	20	82	14	60	51	0	0	48	1.00
3432280--3432453	88	2.0	88	91	0	285	32	16	19	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3443190--3443273	35	2.4	35	91	0	132	34	21	21	22	1.97
3444993--3445026	16	2.1	17	88	5	52	58	8	0	32	1.29
3447791--3447844	27	2.0	26	82	13	65	59	1	0	38	1.08
3448891--3448920	9	3.3	9	90	0	51	56	13	0	30	1.37
3460270--3460314	22	2.0	22	86	0	63	31	6	35	26	1.82
3462987--3463022	18	2.0	18	88	0	54	50	33	0	16	1.46
3463981--3464012	15	2.1	15	100	0	64	65	0	0	34	0.93
3464387--3464420	15	2.3	15	89	0	50	38	29	2	29	1.72
3465236--3465294	25	2.4	25	85	5	75	33	11	6	47	1.67
3466552--3466844	157	1.9	157	87	3	441	55	3	1	39	1.25
3466552--3466888	157	2.1	154	85	4	433	54	3	2	39	1.29
3471423--3471448	8	3.2	8	100	0	52	0	23	0	76	0.78
3475866--3475907	22	1.9	22	85	9	59	52	0	2	45	1.13
3479230--3479258	2	14.5	2	100	0	58	51	0	0	48	1.00
3479581--3481246	494	3.4	495	79	7	1453	34	9	7	48	1.64
3480640--3480682	21	2.0	21	82	8	52	39	6	0	53	1.28
3479525--3481264	252	7.0	251	79	6	1524	34	10	7	48	1.64
3479641--3481010	746	1.8	738	82	3	1766	35	9	7	48	1.62
3482865--3482937	32	2.2	33	80	2	85	36	6	8	47	1.60
3483866--3483900	18	1.9	18	94	0	61	82	0	17	0	0.66
3483863--3483902	14	2.7	15	88	3	55	82	0	17	0	0.67
3494664--3494708	19	2.4	19	88	0	63	17	22	17	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3494673--3494710	19	2.0	19	94	0	67	13	21	18	47	1.82
3495454--3495490	3	12.3	3	94	0	65	32	0	2	64	1.07
3508094--3508159	12	5.5	12	85	0	60	50	16	0	33	1.46
3508096--3508146	16	2.9	16	81	16	57	50	21	0	27	1.48
3508108--3508144	4	9.8	4	88	11	60	51	24	0	24	1.49
3510513--3510651	71	2.0	71	82	0	170	46	12	14	26	1.79
3511290--3511353	33	2.0	32	87	9	94	29	1	1	67	1.09
3511319--3511349	14	2.1	15	94	5	55	32	0	0	67	0.91
3512821--3512856	18	2.0	18	100	0	72	33	16	16	33	1.92
3525305--3525348	21	2.1	21	83	8	54	63	0	2	34	1.07
3538488--3538545	31	1.9	31	85	3	82	60	3	5	31	1.35
3546828--3546869	2	21.5	2	85	4	59	45	0	4	50	1.23
3558572--3558640	35	2.0	34	83	8	86	60	13	0	26	1.32
3558603--3558691	40	2.2	40	89	0	142	61	15	0	22	1.33
3559613--3559661	22	2.2	21	79	10	53	46	0	2	51	1.12
3563345--3563427	2	41.0	2	78	7	69	45	7	3	43	1.49
3568966--3569030	23	2.8	23	80	2	67	52	3	4	40	1.38
3596948--3596973	12	2.2	12	100	0	52	92	0	7	0	0.39
3597157--3597185	14	2.0	15	93	6	51	89	6	3	0	0.57
3605247--3605309	33	1.9	33	83	6	83	38	9	7	44	1.66
3606336--3606387	27	2.0	28	85	11	74	48	0	0	51	1.00
3606393--3606440	15	3.1	15	77	14	53	41	2	2	54	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3606517--3606563	22	2.2	21	85	14	62	42	4	4	48	1.42
3606663--3606795	42	3.2	41	86	4	133	40	3	2	53	1.31
3606692--3606803	42	2.7	41	90	4	179	40	4	0	55	1.20
3606725--3606794	16	4.8	16	70	20	53	41	5	0	52	1.25
3611990--3612026	18	2.1	17	90	5	56	27	8	18	45	1.77
3613778--3613894	33	3.9	31	73	22	117	67	1	2	28	1.13
3613762--3613845	15	5.2	16	73	18	59	69	1	1	28	1.04
3613825--3613894	29	2.5	26	72	19	59	67	1	2	28	1.14
3613924--3614123	60	3.4	59	70	13	189	60	1	6	32	1.28
3613982--3614049	24	2.9	24	68	18	61	66	0	1	32	1.01
3614001--3614032	16	1.9	16	93	6	55	68	0	0	31	0.90
3613905--3614134	114	2.0	115	95	0	417	61	0	5	31	1.25
3614295--3614349	26	2.1	26	93	0	92	36	21	9	32	1.85
3623131--3623202	24	3.2	24	64	28	66	51	5	1	41	1.34
3626308--3626368	25	2.4	25	100	0	122	50	0	9	39	1.35
3627178--3627209	16	2.1	16	88	11	50	46	0	3	50	1.17
3637458--3637510	20	2.6	21	76	14	65	52	1	0	45	1.11
3637688--3637732	18	2.4	18	82	10	56	51	8	6	33	1.59
3646990--3647028	2	19.5	2	89	0	60	48	0	5	46	1.24
3656228--3656265	18	2.1	19	85	5	51	42	18	7	31	1.79
3666978--3667019	16	2.6	16	88	0	57	35	4	28	30	1.78
3666990--3667022	16	2.1	16	100	0	66	33	6	24	36	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3685679--3685747	36	1.9	36	93	0	120	30	15	10	43	1.80
3685997--3686021	12	2.1	12	100	0	50	8	16	0	76	1.02
3691282--3691341	29	2.0	30	96	3	113	21	15	23	40	1.91
3703952--3704058	51	2.1	51	89	5	164	41	24	7	27	1.81
3707395--3707490	42	2.3	42	87	1	129	18	15	16	48	1.81
3707388--3707490	43	2.4	43	85	1	136	21	14	16	47	1.82
3709210--3709248	19	2.1	19	85	9	53	69	0	12	17	1.19
3718927--3718956	15	2.0	15	100	0	60	40	13	0	46	1.43
3724572--3724614	21	2.0	22	86	4	61	41	16	6	34	1.75
3725315--3725343	8	3.6	8	100	0	58	41	0	10	48	1.37
3726051--3726100	2	25.0	2	100	0	100	50	0	0	50	1.00
3732185--3732237	27	2.0	27	100	0	106	30	7	24	37	1.83
3739942--3740005	31	2.1	31	90	0	101	26	18	20	34	1.96
3748118--3748427	80	3.9	80	82	3	338	34	7	21	36	1.82
3756297--3756416	40	3.0	40	97	0	231	25	20	20	34	1.97
3756995--3757031	15	2.5	15	90	0	65	43	13	21	21	1.87
3759553--3759651	33	3.0	33	84	0	126	31	23	12	33	1.91
3759764--3759824	30	2.0	30	96	0	113	39	9	21	29	1.85
3764747--3764861	50	2.3	49	79	5	133	33	17	12	36	1.87
3764853--3764920	35	1.9	36	87	3	102	39	23	8	27	1.84
3765416--3765461	21	2.3	20	88	7	67	26	23	10	39	1.88
3765987--3766236	28	9.3	27	74	8	168	36	10	15	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3766084--3766155	26	2.7	28	76	8	78	43	9	12	34	1.76
3766014--3766225	52	4.0	51	71	13	158	39	10	13	36	1.79
3766190--3766249	28	2.1	28	84	0	75	40	6	16	36	1.75
3775642--3775683	21	2.0	21	85	0	57	38	14	7	40	1.73
3795538--3795636	34	2.9	33	77	5	90	35	26	13	25	1.92
3805400--3805479	28	2.9	28	84	0	106	45	18	12	23	1.84
3811054--3811144	30	3.0	30	84	9	114	29	5	6	58	1.46
3821697--3821749	20	2.7	20	87	0	70	37	11	15	35	1.83
3821824--3821871	25	1.9	25	83	8	62	47	0	2	50	1.12
3824488--3824529	22	2.0	21	90	4	66	0	33	2	64	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14