Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397269.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_12.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5666189

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  14  of  14  ( 1598 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5429594--5429622
14
2.1
14
100
0
58
65
0
0
34
0.93
5456737--5456781
22
2.0
22
83
8
56
8
8
6
75
1.19
5471644--5471762
49
2.4
49
77
5
125
35
25
10
28
1.90
5474676--5474755
21
3.8
19
72
18
54
17
10
1
71
1.20
5474703--5474735
15
2.3
15
89
5
50
15
9
0
75
1.03
5474724--5474773
20
2.5
19
80
6
55
22
4
0
74
0.99
5475673--5475718
21
2.2
20
79
20
51
60
4
34
0
1.16
5478963--5479042
8
9.2
8
78
15
72
77
1
6
15
1.02
5478963--5479061
15
6.0
15
74
18
65
78
1
8
12
1.00
5478966--5479059
42
2.2
42
82
14
115
78
1
8
11
1.01
5478947--5479055
52
2.1
51
81
10
123
76
1
7
14
1.09
5482506--5482594
20
4.2
20
77
11
70
11
13
1
74
1.14
5482539--5482572
12
3.0
12
87
12
54
14
14
0
70
1.17
5482564--5482600
16
2.4
16
79
20
51
18
5
0
75
0.99
5482566--5482600
15
2.3
15
90
9
54
17
5
0
77
0.96
5484963--5485029
20
3.3
20
81
18
70
16
10
0
73
1.10
5485000--5485066
20
3.5
19
71
17
57
20
7
1
70
1.20
5528577--5528635
25
2.3
27
79
11
77
25
13
28
32
1.94
5531775--5531824
25
2.0
25
84
0
64
24
16
30
30
1.96
5566550--5566592
22
2.0
22
85
0
59
39
16
2
41
1.61
5572834--5572887
3
18.0
3
92
0
90
29
0
3
66
1.09
5584831--5584863
3
11.0
3
93
0
57
30
0
3
66
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5608835--5609048
29
7.6
29
77
7
156
18
19
21
40
1.92
5610077--5610117
19
2.2
19
86
0
55
60
0
0
39
0.96
5612793--5612838
24
2.0
24
86
4
67
34
0
13
52
1.40
5613103--5613149
24
2.0
24
83
4
60
38
0
10
51
1.37
5620384--5620430
24
2.0
24
87
4
69
36
0
12
51
1.40
5622985--5623019
17
2.1
17
100
0
70
34
0
5
60
1.21
5635874--5636086
29
7.6
29
76
9
174
18
21
20
38
1.93
5645928--5646128
29
7.1
29
75
9
155
18
19
19
42
1.90
5645930--5646137
58
3.7
57
75
8
192
18
19
19
41
1.90
5646002--5646153
28
5.5
27
73
14
98
21
20
20
38
1.94
5647717--5647879
29
5.8
29
74
6
120
41
20
19
19
1.91
5653383--5653409
3
9.0
3
100
0
54
33
0
0
66
0.92
5663837--5663918
25
3.1
26
73
13
85
42
20
17
19
1.89
5663792--5663975
29
6.5
28
77
12
155
39
20
20
19
1.92
5663771--5663975
112
1.9
109
84
3
275
37
20
21
20
1.95
5663810--5663983
58
3.1
57
76
12
171
39
20
21
18
1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14

The End!