genome.fa.s16.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397269.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_12.1, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5666189

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   

This is table  5  of  14  ( 1598 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1590520--1590567	26	1.9	24	83	8	60	35	0	2	62	1.07
1599175--1599225	26	2.0	26	88	7	77	41	3	9	45	1.56
1612420--1612454	17	2.1	17	89	5	54	68	0	0	31	0.90
1612578--1612611	16	2.0	18	88	11	54	58	0	2	38	1.13
1614142--1614169	2	14.0	2	100	0	56	50	0	0	50	1.00
1622157--1622188	2	16.0	2	100	0	64	50	0	0	50	1.00
1625602--1625649	24	2.0	24	88	8	71	41	18	6	33	1.76
1628953--1629003	24	2.1	24	88	0	75	31	15	27	25	1.96
1629448--1629504	30	1.9	30	92	7	98	47	14	19	19	1.82
1633208--1633256	19	2.5	20	80	6	55	73	6	16	4	1.19
1634588--1634620	13	2.4	14	90	5	50	72	3	0	24	0.98
1643855--1643881	2	13.5	2	100	0	54	51	0	0	48	1.00
1644567--1644608	19	2.3	19	87	4	59	26	0	0	73	0.83
1647964--1648132	31	5.5	31	72	12	109	52	20	7	20	1.69
1647934--1648102	62	2.7	62	76	5	171	52	21	8	17	1.70
1648051--1648132	30	2.7	31	86	1	103	57	17	6	19	1.60
1658015--1658054	16	2.5	16	87	0	53	70	0	22	7	1.12
1663355--1663413	30	2.0	29	83	6	73	50	3	5	40	1.41
1666889--1666925	2	18.5	2	100	0	74	51	0	0	48	1.00
1670971--1671020	21	2.3	21	82	3	64	50	0	0	50	1.00
1671205--1671255	25	2.0	27	85	14	72	58	0	0	41	0.98
1675592--1675637	22	2.0	23	87	4	67	26	56	2	15	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1678641--1678693	27	2.0	27	92	0	88	32	7	37	22	1.82
1683437--1683507	34	2.1	34	89	5	108	45	2	14	38	1.59
1684019--1684071	27	2.0	27	84	0	70	37	24	22	15	1.92
1690771--1690812	3	14.0	3	100	0	84	33	0	0	66	0.92
1698722--1698776	15	3.7	15	87	4	76	34	3	25	36	1.74
1698992--1699065	33	2.2	34	87	2	105	28	5	1	64	1.23
1699102--1699180	33	2.4	31	80	17	88	30	0	1	68	0.98
1703577--1703616	14	3.1	14	75	20	50	5	7	5	82	0.94
1706421--1706475	27	2.0	27	89	0	83	12	27	21	38	1.90
1714320--1714356	5	7.4	5	93	0	65	40	0	2	56	1.13
1716322--1716379	22	2.6	23	83	5	75	55	1	5	37	1.33
1716452--1716490	2	19.5	2	100	0	78	51	0	0	48	1.00
1717796--1717825	14	2.2	14	94	5	53	53	0	0	46	1.00
1721996--1722033	18	2.1	18	90	0	58	55	2	5	36	1.37
1723916--1723953	19	2.0	19	100	0	76	57	5	5	31	1.43
1725847--1725873	2	13.5	2	100	0	54	51	0	48	0	1.00
1730070--1730096	12	2.2	12	100	0	54	37	7	22	33	1.82
1744910--1744950	20	2.0	21	85	4	57	43	0	0	56	0.99
1744925--1744991	25	2.6	25	81	11	66	50	0	0	49	1.00
1752212--1752271	30	2.0	29	93	3	102	36	6	21	35	1.80
1754670--1754699	3	10.0	3	92	0	51	33	36	0	30	1.58
1760613--1760641	14	2.0	15	93	6	51	68	0	0	31	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1782677--1782855	91	2.0	91	83	4	227	30	14	17	37	1.90
1782561--1782972	208	2.0	207	81	6	494	33	15	13	37	1.87
1787485--1787577	2	46.5	2	100	0	186	0	49	0	50	1.00
1787586--1787629	22	2.0	22	95	0	79	47	18	2	31	1.61
1810925--1810986	5	12.0	5	76	19	56	33	6	0	59	1.23
1810925--1811005	37	2.2	37	90	0	126	32	7	1	59	1.33
1821199--1821241	18	2.4	17	81	11	50	46	0	0	53	1.00
1821311--1821349	20	2.0	20	84	0	51	41	15	5	38	1.69
1821479--1821529	11	4.8	11	74	16	54	47	0	0	52	1.00
1824589--1824626	2	19.5	2	94	5	69	47	0	0	52	1.00
1824928--1824975	2	24.0	2	100	0	96	50	0	0	50	1.00
1835324--1835420	45	2.2	45	98	0	185	18	16	15	49	1.80
1848893--1848925	2	17.0	2	87	6	50	48	3	0	48	1.17
1851187--1851230	20	2.1	21	87	4	63	47	4	0	47	1.22
1852088--1852120	16	2.0	17	94	5	59	42	6	0	51	1.26
1853612--1853653	22	1.9	22	85	0	57	57	0	11	30	1.35
1878634--1878671	14	2.6	15	87	4	51	63	0	31	5	1.17
1884248--1884311	30	2.1	30	94	0	110	25	18	7	48	1.75
1908538--1908578	20	2.0	20	100	0	82	60	9	14	14	1.57
1911896--1912055	14	11.1	14	65	22	57	67	0	1	30	1.03
1911898--1912011	5	23.4	5	68	12	58	68	0	0	29	1.02
1911892--1912023	33	4.4	33	72	21	112	67	0	0	31	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1911939--1912028	30	3.3	25	77	19	92	68	0	1	30	0.96
1911898--1912052	50	3.0	51	77	11	133	68	0	1	29	1.02
1912002--1912088	33	2.6	33	87	3	111	67	0	2	29	1.03
1912037--1912101	33	1.9	33	87	3	94	66	3	3	27	1.22
1912326--1912360	15	2.3	15	90	0	52	37	28	2	31	1.72
1914381--1914414	15	2.3	15	89	0	50	41	0	2	55	1.15
1915111--1915146	16	2.2	17	95	5	65	47	0	0	52	1.00
1921840--1921865	8	3.2	8	100	0	52	42	0	23	34	1.54
1924023--1924152	66	2.0	66	87	0	188	29	16	15	39	1.89
1926394--1926641	123	2.0	124	92	0	417	35	13	16	35	1.88
1965256--1965319	30	2.1	30	82	0	74	40	31	12	15	1.85
1967358--1967386	2	14.5	2	100	0	58	51	0	0	48	1.00
1969641--1969674	2	17.0	2	93	0	59	47	0	2	50	1.16
1970943--1970972	3	10.0	3	92	0	51	63	3	0	33	1.11
1972401--1972436	18	2.0	18	88	0	54	38	5	13	41	1.68
1974863--1974924	32	1.9	32	86	0	88	29	22	14	33	1.94
1974809--1974990	95	1.9	95	96	0	337	34	16	14	34	1.90
1974895--1975022	63	2.0	63	93	0	220	37	14	13	34	1.86
1982117--1982175	30	2.0	29	83	3	73	54	6	6	32	1.53
1990742--1990793	27	1.9	27	96	0	95	51	19	19	9	1.73
2003914--2003965	26	2.0	26	96	0	95	48	19	13	19	1.81
2006024--2006067	20	2.2	20	87	0	61	22	2	25	50	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2006214--2006262	25	2.0	25	88	8	73	51	6	2	40	1.38
2006560--2006584	13	1.9	13	100	0	50	64	20	0	16	1.30
2008698--2008735	16	2.4	16	86	8	51	26	0	0	73	0.83
2009678--2009744	21	3.2	20	79	10	62	32	16	13	37	1.88
2013005--2013134	64	2.0	64	85	2	172	25	22	13	38	1.91
2013139--2013247	54	2.0	54	82	3	130	25	23	21	29	1.99
2013219--2013285	29	2.3	29	87	2	91	26	34	11	26	1.91
2022385--2022415	2	15.5	2	93	0	53	48	3	0	48	1.17
2030072--2030172	51	2.0	51	90	0	157	30	27	22	18	1.98
2030863--2030930	17	3.9	17	73	17	59	61	0	0	38	0.96
2030842--2030924	41	2.2	37	79	12	87	61	1	0	37	1.04
2030883--2030928	22	2.1	22	87	0	65	67	0	0	32	0.91
2035268--2035339	33	2.2	32	82	9	83	48	9	2	38	1.51
2035557--2035619	10	6.3	10	72	7	56	74	0	4	20	0.99
2037421--2037480	24	2.5	24	83	0	66	18	0	20	61	1.34
2037438--2037489	24	2.2	24	82	3	61	19	1	19	59	1.47
2043286--2043340	26	2.1	26	90	6	85	41	0	12	45	1.42
2050262--2050288	1	27.0	1	100	0	54	0	100	0	0	0.00
2055288--2055356	35	2.0	35	88	5	104	46	0	37	15	1.47
2060624--2060662	20	1.9	21	84	5	53	69	0	10	20	1.17
2060656--2060681	12	2.2	12	100	0	52	76	0	0	23	0.78
2063110--2063146	15	2.5	15	100	0	74	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2063110--2063153	14	3.1	14	90	3	61	43	0	0	56	0.99
2067448--2067477	15	2.0	15	93	0	51	16	33	13	36	1.88
2075113--2075156	19	2.3	19	92	0	70	25	2	11	61	1.41
2084178--2084270	46	2.0	46	89	0	141	55	15	8	20	1.65
2085929--2085962	16	2.1	16	94	0	59	52	0	44	2	1.16
2097728--2097793	29	2.3	29	97	0	123	40	30	10	18	1.84
2112094--2112139	16	2.8	16	81	12	58	58	6	8	26	1.52
2126884--2126934	23	2.2	24	82	10	61	58	0	1	39	1.09
2126956--2127006	15	3.3	15	73	13	50	31	1	1	64	1.15
2127378--2127434	22	2.6	21	78	10	53	40	1	0	57	1.09

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14