genome.fa.s1836.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001836.1 Hibiscus syriacus cultivar Beakdansim tig00003715_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2428596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  3  of  12  ( 1328 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
602994--603060	19	3.5	19	83	4	89	37	23	23	14	1.93
603049--603106	14	3.9	14	79	16	71	48	24	17	10	1.78
603033--603111	32	2.4	33	95	2	142	46	22	18	11	1.81
603140--603197	14	3.9	14	79	16	71	10	17	24	48	1.78
603123--603213	32	2.8	33	94	3	166	12	18	21	47	1.81
603198--603252	20	2.8	19	83	8	65	16	23	23	36	1.94
603731--603778	18	2.7	18	80	0	60	20	14	39	25	1.91
605401--605444	22	2.0	22	95	0	79	18	15	45	20	1.85
605632--605725	20	4.7	20	80	2	89	23	18	24	34	1.96
605612--605726	20	5.7	20	78	5	88	23	17	23	35	1.95
605715--605807	20	4.5	21	75	4	91	17	23	17	41	1.89
605654--605788	41	3.3	40	79	6	128	19	20	20	40	1.92
605715--605807	41	2.3	41	94	0	168	17	23	17	41	1.89
608907--608938	2	16.5	2	93	6	57	50	0	0	50	1.00
609414--609550	21	6.7	21	71	6	75	35	25	18	20	1.95
609519--609727	20	10.4	20	81	6	208	36	24	17	20	1.94
610375--610429	24	2.3	24	87	0	74	27	12	20	40	1.88
610389--610442	24	2.2	24	86	0	72	24	12	20	42	1.87
610617--610641	12	2.1	12	100	0	50	72	0	28	0	0.86
612157--612293	19	7.4	19	78	8	122	45	24	18	10	1.81
612232--612310	33	2.4	33	95	0	140	44	21	22	11	1.84
612306--612383	19	4.4	19	79	15	94	7	17	28	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
612341--612397	14	3.7	14	72	20	51	8	22	24	43	1.81
612322--612413	33	2.8	33	88	5	132	8	19	26	45	1.79
614329--614392	20	3.2	20	82	4	92	46	15	25	12	1.81
614327--614391	21	3.1	21	82	4	96	47	15	26	10	1.78
614376--614432	14	3.7	14	70	20	51	43	21	24	10	1.83
614327--614449	33	3.5	33	87	8	156	46	17	24	11	1.81
614327--614454	19	7.1	19	67	21	78	45	17	25	11	1.82
614477--614569	21	4.6	20	81	7	116	12	21	18	47	1.82
614474--614569	42	2.3	40	85	5	138	12	21	17	47	1.81
614649--614719	33	2.2	33	94	0	124	47	16	23	11	1.79
615099--615291	20	9.6	20	84	5	237	19	19	26	34	1.95
616344--616465	63	2.0	62	86	4	174	44	8	3	44	1.50
619787--619940	62	2.5	63	82	6	170	32	22	23	21	1.98
622971--623021	2	25.5	2	100	0	102	50	0	0	49	1.00
623961--624096	62	2.2	63	82	4	159	34	19	22	24	1.96
626093--626124	6	5.3	6	96	0	55	31	21	34	12	1.91
628365--628398	3	11.3	3	93	0	59	64	2	0	32	1.08
633528--633566	12	3.0	13	92	7	62	66	2	0	30	1.05
634810--634897	3	30.0	3	82	8	110	61	0	0	38	0.96
635047--635532	76	6.4	76	98	0	945	34	23	19	22	1.96
635473--635832	185	2.0	184	93	2	616	39	14	14	31	1.86
636396--636472	22	3.5	22	90	0	127	40	12	11	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
637727--637762	17	2.0	19	89	10	58	38	11	5	44	1.63
638246--638393	63	2.3	65	83	8	187	28	17	20	33	1.96
641374--641713	114	3.0	114	95	0	599	30	20	16	33	1.94
643872--643913	22	2.0	21	85	4	57	11	11	0	76	1.03
643918--643963	22	2.0	23	91	4	76	4	13	13	69	1.33
649011--649049	20	2.0	20	85	10	53	71	2	2	23	1.10
649038--649104	28	2.5	26	85	7	82	61	2	4	31	1.31
649903--649949	12	3.5	13	88	11	60	65	4	0	29	1.11
650943--651621	113	5.9	113	82	6	783	38	14	18	28	1.90
650943--651627	226	3.0	224	86	5	869	38	14	18	28	1.90
651294--651669	123	3.1	123	79	9	477	39	14	17	27	1.89
651419--651636	112	1.9	112	89	2	314	37	15	17	29	1.91
651885--651938	3	17.7	3	96	3	99	35	0	0	64	0.94
653196--653255	3	20.3	3	78	10	52	25	1	3	70	1.12
653196--653260	27	2.4	27	76	19	73	26	1	3	69	1.12
653256--653296	19	2.2	18	86	8	55	60	0	0	39	0.96
658888--658928	2	21.0	2	90	5	66	51	2	0	46	1.14
659042--659098	16	3.5	15	77	15	60	56	3	3	36	1.34
659042--659106	34	1.9	33	87	3	94	55	4	3	36	1.36
658914--659180	36	7.2	36	73	16	115	48	4	4	42	1.43
659142--659209	29	2.3	29	79	0	73	48	4	7	39	1.51
659288--659332	14	3.1	14	87	3	63	22	2	0	75	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
660726--660755	13	2.2	14	94	5	53	23	0	0	76	0.78
662002--662045	16	2.8	16	100	0	88	22	6	40	29	1.80
662797--662842	19	2.4	19	96	0	83	13	10	8	67	1.42
666139--666718	165	3.5	165	79	6	609	30	25	20	23	1.99
666122--666715	84	7.2	83	77	6	555	29	25	20	23	1.99
666113--666714	249	2.4	247	84	3	789	29	25	20	23	1.99
666140--666788	165	3.9	165	80	5	607	30	25	20	24	1.99
667350--667379	2	15.0	2	100	0	60	50	0	0	50	1.00
667497--667552	16	3.5	15	77	15	58	57	3	3	35	1.34
667497--667560	34	1.9	33	87	3	92	56	4	3	35	1.36
667374--667634	36	7.2	36	72	16	132	47	4	5	41	1.49
667596--667663	29	2.3	29	79	0	73	48	4	7	39	1.51
667742--667786	14	3.1	14	87	3	63	22	2	0	75	0.91
669190--669219	13	2.2	14	94	5	53	23	0	0	76	0.78
682875--682931	20	2.8	20	82	12	64	57	0	0	42	0.98
682848--682916	26	2.6	26	77	11	77	59	0	0	40	0.97
684110--684164	27	2.1	27	89	3	85	36	1	0	61	1.06
684264--684306	19	2.3	19	79	0	50	27	4	4	62	1.35
685604--685662	21	2.9	21	80	10	68	30	1	0	67	1.00
687160--687219	23	2.5	23	78	7	59	18	6	1	73	1.14
687281--687307	12	2.2	12	100	0	54	37	7	0	55	1.28
690972--691863	106	8.5	106	92	1	1386	34	24	18	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
691873--692097	124	1.8	124	89	1	353	32	25	19	22	1.97
692208--692313	36	2.9	36	91	0	167	24	19	13	42	1.87
692737--692785	20	2.5	20	86	6	64	34	0	0	65	0.93
694426--694452	12	2.2	12	100	0	54	37	7	0	55	1.28
695121--695174	27	2.0	27	100	0	108	48	11	7	33	1.67
695130--695191	27	2.3	27	86	5	81	53	12	4	29	1.59
695206--695449	81	3.0	80	95	3	425	38	11	11	38	1.77
697211--697250	12	3.3	12	85	0	53	47	10	0	42	1.37
697232--697257	2	13.0	2	100	0	52	50	0	0	50	1.00
700473--700519	4	11.8	4	95	0	85	27	46	0	25	1.53
703166--703208	16	2.7	16	85	10	61	34	4	16	44	1.68
703396--703494	23	4.4	23	81	10	89	19	24	24	32	1.97
707032--707066	3	11.7	3	93	0	61	0	0	34	65	0.93
713130--713212	44	1.9	43	82	7	105	32	10	21	34	1.88
713323--713419	23	4.2	23	93	0	158	16	27	23	31	1.96
714027--714061	16	2.2	16	90	5	54	40	8	17	34	1.80
715178--715211	16	2.2	16	90	10	54	52	2	2	41	1.31
715222--715277	17	3.5	17	70	20	57	53	0	5	41	1.24
715225--715289	32	2.0	32	88	5	96	53	0	4	41	1.21
715277--715330	21	2.7	20	81	13	74	48	0	9	42	1.35
715225--715310	26	3.0	27	79	12	84	50	0	6	43	1.29
715277--715332	22	2.7	21	83	8	71	48	0	8	42	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
715428--715464	15	2.5	15	95	0	65	35	8	0	56	1.29
715423--715462	12	3.3	12	89	0	53	32	10	0	57	1.32
717456--717536	23	3.5	23	94	0	135	33	28	4	33	1.79
717956--718026	19	3.6	19	81	7	79	36	28	12	22	1.91
717956--718026	21	3.5	20	79	7	74	36	28	12	22	1.91
718017--718086	20	3.5	19	73	7	68	25	21	17	35	1.95
717996--718106	40	2.8	40	77	4	116	30	21	13	34	1.92
718881--718914	12	2.8	12	90	0	50	55	29	0	14	1.40
719025--719078	24	2.2	24	96	0	99	24	16	16	42	1.88
721873--722240	194	1.9	194	93	3	634	41	24	7	26	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12