genome.fa.s1836.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001836.1 Hibiscus syriacus cultivar Beakdansim tig00003715_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2428596

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   

This is table  5  of  12  ( 1328 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
965186--965395	65	3.3	63	80	11	221	30	24	19	26	1.98
965367--965415	19	2.6	19	84	9	57	24	28	20	26	1.99
966355--966384	9	3.3	9	90	0	51	3	10	0	86	0.67
968872--968911	20	2.0	20	85	0	53	45	10	22	22	1.82
969477--969571	44	2.2	44	96	0	172	14	28	20	36	1.92
969792--969893	45	2.2	45	84	1	132	57	10	4	26	1.52
970785--970815	16	1.9	16	93	0	53	67	0	12	19	1.22
977397--977434	14	2.7	14	84	11	51	21	10	28	39	1.86
980494--980913	211	2.0	212	90	4	670	47	14	9	29	1.75
981839--981894	21	2.8	20	83	2	76	32	17	5	44	1.72
983797--983838	6	7.0	6	100	0	84	66	0	16	16	1.25
990571--990615	17	2.9	15	78	12	54	44	11	13	31	1.78
990574--990607	17	2.0	17	94	0	59	38	11	11	38	1.79
991008--991062	13	4.2	13	75	13	58	49	12	3	34	1.59
991048--991145	33	3.0	33	92	2	155	44	15	7	32	1.73
991135--991179	20	2.3	20	92	3	74	48	6	15	28	1.70
993434--993477	12	3.4	12	80	17	52	13	18	18	50	1.79
993521--993560	20	2.0	20	90	0	62	45	20	15	20	1.86
994595--994626	16	1.9	17	93	6	57	15	21	31	31	1.95
996680--996789	51	2.2	51	86	3	150	13	38	30	18	1.89
996707--996804	51	2.0	51	83	4	128	16	34	28	20	1.94
998515--998597	30	2.8	30	83	1	96	34	31	16	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
998572--998666	31	3.1	31	80	3	102	35	21	16	26	1.94
999318--999468	64	2.3	65	84	6	182	28	17	19	33	1.95
1002276--1002405	51	2.5	50	81	7	138	20	27	33	18	1.96
1003799--1003910	37	3.0	38	75	5	111	41	5	7	46	1.54
1004619--1004676	21	2.8	21	94	0	98	24	20	15	39	1.91
1004671--1004770	40	2.5	40	86	1	137	29	22	14	35	1.93
1004745--1004814	18	3.5	21	75	16	69	32	15	10	41	1.81
1004768--1004839	18	3.9	18	78	7	72	30	16	12	40	1.86
1004673--1004840	20	8.5	20	72	13	107	29	20	13	36	1.91
1004758--1004849	38	2.4	39	87	5	132	32	17	11	38	1.86
1004977--1005014	16	2.5	15	84	12	51	28	5	0	65	1.14
1005745--1005791	24	2.0	24	91	0	76	27	21	14	36	1.93
1008314--1008386	33	2.4	30	86	9	94	30	15	20	34	1.93
1008383--1008415	13	2.5	13	90	0	57	36	15	21	27	1.93
1008512--1008665	64	2.4	64	90	4	229	51	16	1	29	1.55
1008641--1008679	14	2.6	15	80	12	53	48	20	0	30	1.50
1010037--1010155	42	2.8	41	86	5	166	24	17	36	21	1.95
1010037--1010155	21	5.7	21	82	3	141	24	17	36	21	1.95
1012146--1012196	20	2.5	20	100	0	102	9	17	21	50	1.74
1012535--1012576	22	1.9	22	90	0	66	28	14	35	21	1.92
1012701--1012762	20	3.2	20	75	11	65	35	17	24	22	1.95
1012754--1012793	20	2.0	21	95	5	73	32	15	22	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1012757--1012802	21	2.2	20	84	3	56	34	15	23	26	1.94
1018907--1018954	10	4.9	10	85	7	55	47	0	0	52	1.00
1019914--1020161	130	1.9	130	94	0	433	35	14	12	36	1.85
1019928--1020192	130	2.0	129	82	4	318	39	12	13	34	1.83
1020481--1020541	26	2.3	26	82	5	68	45	1	3	49	1.28
1020618--1020651	16	2.0	18	88	11	54	64	5	2	26	1.30
1020774--1020816	21	2.0	21	100	0	86	39	0	13	46	1.44
1020785--1020870	35	2.5	35	82	3	93	38	1	19	40	1.60
1022533--1022681	21	7.1	21	83	6	133	30	24	21	24	1.99
1022547--1022773	83	2.7	84	82	7	268	28	21	22	27	1.99
1022533--1022818	104	2.8	104	85	5	332	27	22	21	28	1.99
1022615--1022820	21	9.9	21	74	15	110	26	21	21	30	1.99
1022616--1022839	104	2.2	104	94	0	385	26	21	21	30	1.98
1022905--1022948	6	7.8	6	94	5	67	34	47	18	0	1.49
1023574--1023649	23	3.5	23	75	14	88	38	22	19	19	1.94
1023564--1023658	42	2.3	42	92	0	154	36	23	18	21	1.95
1023589--1023664	21	3.6	21	79	13	84	35	26	19	18	1.95
1024088--1024120	2	16.5	2	100	0	66	51	0	0	48	1.00
1029035--1029070	17	2.2	17	90	5	56	41	22	0	36	1.54
1034310--1034417	54	2.0	54	98	0	207	19	16	21	42	1.89
1041904--1041943	21	1.9	21	89	0	62	15	27	25	32	1.95
1047494--1047588	10	8.5	10	68	21	55	60	20	10	9	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1047510--1047541	14	2.3	14	94	0	55	65	25	6	3	1.31
1047498--1047588	23	3.9	23	82	1	119	60	19	9	9	1.56
1047851--1047882	14	2.1	16	88	11	50	50	18	15	15	1.79
1049826--1050331	252	2.0	252	87	2	739	22	18	18	40	1.91
1053360--1053828	245	2.0	236	86	7	666	40	19	12	27	1.88
1058279--1058323	2	22.5	2	100	0	90	48	0	0	51	1.00
1058177--1058403	123	1.8	123	99	0	445	43	5	10	40	1.63
1059591--1059616	2	13.0	2	100	0	52	50	0	0	50	1.00
1061695--1061739	17	2.6	17	85	0	63	17	11	2	68	1.29
1062026--1062132	39	2.9	36	75	13	119	26	19	23	30	1.98
1062143--1062247	54	1.9	54	94	0	183	40	20	15	24	1.91
1062232--1062284	26	2.0	26	96	0	97	41	26	9	22	1.84
1065622--1065701	40	2.0	40	87	0	115	30	11	32	26	1.91
1065603--1065669	30	2.2	30	78	5	73	28	8	34	28	1.87
1065635--1065701	20	3.3	20	100	0	134	31	8	35	23	1.86
1065635--1065725	40	2.3	39	86	7	121	31	6	37	24	1.81
1067750--1067826	23	3.3	23	68	13	77	31	25	24	18	1.97
1067873--1067920	20	2.4	20	96	0	87	50	18	8	22	1.74
1068085--1068155	31	2.3	31	90	2	108	32	22	4	40	1.73
1075340--1075596	126	2.0	125	92	2	426	33	11	21	34	1.89
1080039--1080127	40	2.2	41	78	13	96	25	28	17	28	1.98
1080102--1080148	21	2.2	21	92	0	76	21	27	14	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1080109--1080156	21	2.3	21	85	0	60	22	27	16	33	1.96
1080722--1080818	20	4.8	20	77	9	99	50	18	17	13	1.78
1080722--1080829	19	5.5	19	79	5	90	50	20	16	12	1.78
1080825--1080950	19	7.1	19	72	18	119	9	24	19	46	1.79
1080847--1080903	14	3.7	14	75	20	60	8	24	22	43	1.81
1080887--1080948	20	3.2	20	81	4	81	9	24	16	50	1.75
1080830--1080926	33	2.9	33	100	0	194	9	23	20	46	1.79
1082643--1083018	94	4.1	94	93	3	595	21	11	19	48	1.80
1083109--1083189	38	2.1	39	95	2	146	50	22	19	7	1.72
1083115--1083190	19	3.9	19	86	3	116	50	25	18	6	1.71
1083206--1083286	39	2.1	39	92	0	135	11	22	19	46	1.81
1083213--1083279	19	3.5	19	89	4	107	8	22	22	46	1.79
1083702--1083790	42	2.1	42	80	0	106	21	38	16	23	1.93
1085171--1085206	14	2.6	14	95	0	63	33	0	22	44	1.53
1085351--1085501	19	8.7	19	65	21	89	11	23	19	44	1.84
1085355--1085481	33	3.8	33	95	0	227	11	23	18	45	1.83
1085376--1085463	14	5.6	14	67	23	50	11	23	19	45	1.83
1085454--1085508	20	2.8	19	83	2	65	18	21	21	38	1.94
1085475--1085547	20	3.6	20	70	17	60	23	17	24	34	1.96
1087791--1087818	14	2.0	14	100	0	56	14	7	28	50	1.69
1088025--1088071	24	2.0	24	95	0	85	36	21	21	21	1.96
1088025--1088085	24	2.5	24	83	0	59	34	21	19	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1088875--1089000	41	3.1	40	76	7	130	34	17	19	29	1.94
1088896--1089150	20	12.3	20	74	8	106	30	19	18	30	1.96
1088942--1089107	46	4.0	41	84	10	203	25	21	16	35	1.95
1089104--1089149	21	2.2	21	88	0	65	36	17	28	17	1.92
1095095--1095144	19	2.6	19	93	0	82	14	12	18	56	1.68
1096949--1097008	23	2.5	23	86	8	75	46	1	1	50	1.21
1096927--1097078	60	2.5	63	87	9	235	42	1	1	53	1.20
1097004--1097049	23	2.0	23	91	0	74	47	0	0	52	1.00
1096967--1097042	37	2.1	37	88	7	113	47	0	1	51	1.09
1097575--1097634	31	1.9	31	89	0	93	45	10	5	40	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12