genome.fa.s1838.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001838.1 Hibiscus syriacus cultivar Beakdansim tig00003721_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3924084

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   

This is table  18  of  18  ( 2134 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3720618--3720686	18	3.8	18	94	0	120	11	17	52	18	1.74
3720581--3720650	23	2.9	23	87	6	95	14	21	47	17	1.82
3720581--3720646	13	5.3	13	85	10	93	15	22	45	16	1.85
3724404--3724438	18	1.9	18	88	0	52	28	17	0	54	1.43
3725577--3725650	18	4.4	18	78	16	86	14	20	48	16	1.81
3725558--3725631	13	5.3	13	78	15	76	17	21	44	16	1.86
3725564--3725648	31	2.7	31	92	0	134	16	20	47	16	1.83
3725608--3725653	18	2.6	18	100	0	92	13	17	52	17	1.75
3729021--3729054	17	1.9	17	88	5	50	32	11	29	26	1.92
3729459--3729499	17	2.4	17	80	15	57	68	7	4	19	1.32
3739063--3739101	20	2.0	20	94	0	69	28	25	7	38	1.83
3741804--3741831	11	2.5	11	100	0	56	78	0	7	14	0.95
3747287--3747448	78	2.1	78	97	0	306	47	8	0	43	1.38
3752127--3752179	26	2.1	25	86	10	72	64	5	1	28	1.27
3755039--3755204	30	5.4	32	75	11	132	31	9	2	56	1.44
3756582--3756691	56	1.9	56	83	8	143	30	20	19	30	1.97
3762419--3762513	23	4.4	21	77	9	86	27	26	22	24	2.00
3762438--3762516	23	3.6	23	77	8	92	25	25	25	24	2.00
3762419--3762513	44	2.2	42	87	7	129	27	26	22	24	2.00
3763831--3763892	26	2.4	26	97	0	115	38	17	11	32	1.85
3765164--3765365	65	3.1	63	82	10	230	31	23	19	25	1.98
3766453--3766490	20	1.9	20	94	0	67	13	10	21	55	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3767991--3768089	42	2.4	42	91	0	153	29	35	18	17	1.93
3768204--3768253	21	2.4	21	82	0	64	20	14	32	34	1.92
3768273--3768365	42	2.2	43	75	5	100	22	11	32	33	1.90
3768674--3768745	21	3.4	21	94	0	117	22	40	15	22	1.91
3768679--3768766	42	2.1	42	85	4	115	20	42	15	21	1.89
3770379--3770417	20	2.0	20	89	0	60	25	17	17	38	1.92
3770621--3770656	18	2.0	18	94	0	63	16	2	25	55	1.55
3773104--3773137	12	2.8	12	90	0	50	14	0	29	55	1.40
3773922--3773986	20	3.2	20	70	20	55	35	10	21	32	1.88
3773916--3774011	40	2.4	39	80	10	113	39	9	19	31	1.84
3774084--3774132	21	2.4	21	93	3	82	28	8	30	32	1.86
3774183--3774223	20	2.0	20	90	0	64	24	9	29	36	1.87
3774189--3774235	20	2.3	20	92	0	76	23	12	27	36	1.91
3778399--3778485	35	2.5	33	76	22	88	57	9	8	25	1.57
3779079--3779129	18	2.8	18	93	0	84	29	13	25	31	1.94
3780822--3780858	18	2.0	19	89	5	58	59	0	2	37	1.12
3784880--3784981	55	1.9	54	84	7	138	34	17	10	37	1.85
3796905--3796950	3	15.3	3	100	0	92	65	0	0	34	0.93
3800018--3800055	18	2.1	18	90	0	58	5	31	0	63	1.17
3804745--3804775	9	3.3	9	91	8	53	87	0	3	9	0.66
3810399--3810448	24	2.0	25	88	3	75	80	6	14	0	0.90
3810477--3810525	24	2.1	24	84	3	64	71	6	18	4	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3828108--3828207	20	4.8	19	71	19	67	22	31	23	24	1.99
3830770--3830809	21	1.9	21	89	0	62	52	7	10	30	1.62
3831346--3831385	21	1.9	21	84	0	53	30	12	5	52	1.60
3834247--3834286	21	1.9	21	84	0	53	27	10	12	50	1.72
3834509--3834609	20	4.8	20	74	14	89	21	33	22	21	1.97
3846696--3846735	21	1.9	21	89	0	62	22	40	27	10	1.86
3851096--3851158	31	2.0	31	93	0	108	22	11	11	55	1.66
3851485--3851595	55	2.0	55	98	0	213	35	17	9	38	1.81
3852438--3852557	51	2.4	51	91	1	197	30	16	17	35	1.92
3853452--3853486	15	2.2	16	90	5	54	34	14	0	51	1.42
3853946--3853994	11	4.7	11	78	16	52	2	30	2	65	1.15
3855702--3855769	18	3.8	19	70	21	65	57	0	1	41	1.08
3855777--3855838	23	2.7	23	80	7	63	43	1	0	54	1.09
3855777--3855837	24	2.6	23	78	5	68	42	1	0	55	1.09
3865721--3865760	22	1.9	22	85	10	57	37	0	5	57	1.21
3868019--3868114	35	2.7	35	83	0	111	41	29	1	28	1.63
3868601--3868897	148	2.0	148	95	0	540	46	10	6	36	1.64
3869058--3869153	35	2.7	34	85	6	120	29	2	29	39	1.68
3871858--3871888	2	15.5	2	100	0	62	51	48	0	0	1.00
3873525--3873556	2	16.0	2	100	0	64	0	50	0	50	1.00
3873556--3873604	2	24.5	2	100	0	98	48	0	0	51	1.00
3877410--3877434	11	2.3	11	100	0	50	68	0	0	32	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3879428--3879503	29	2.6	29	78	4	80	56	3	17	22	1.57
3879450--3879563	29	3.9	29	74	10	97	57	8	14	19	1.62
3879392--3879592	30	6.7	30	70	7	124	58	10	12	18	1.63
3880475--3880504	15	1.9	16	93	6	53	6	13	0	80	0.91
3881145--3881204	3	20.7	3	83	13	81	63	0	0	36	0.95
3881135--3881204	18	4.1	17	87	8	97	61	0	0	38	0.96
3881370--3882014	131	4.9	130	82	3	659	25	16	30	27	1.97
3882112--3882271	64	2.5	63	80	10	162	41	11	17	28	1.85
3883803--3883845	4	10.8	4	89	0	50	48	9	0	41	1.35
3883803--3883845	6	7.2	6	86	0	50	48	9	0	41	1.35
3888260--3888390	30	4.4	30	75	8	117	58	6	14	20	1.59
3888977--3889026	22	2.3	22	100	0	100	18	32	34	16	1.92
3889919--3889995	3	26.3	3	84	10	79	58	0	0	41	0.98
3896796--3896861	15	4.4	15	90	0	105	27	40	0	31	1.56
3896683--3896987	129	2.3	130	87	3	427	37	32	7	22	1.82
3896926--3896973	15	3.2	15	77	11	53	25	43	2	29	1.66
3896937--3896987	15	3.4	15	74	15	52	27	37	1	33	1.68
3896917--3896991	30	2.5	30	86	4	98	26	42	1	29	1.63
3898502--3898540	20	2.0	20	89	0	60	20	20	33	25	1.97
3898447--3898593	75	2.0	75	88	0	222	25	21	26	26	2.00
3898734--3898771	19	2.0	20	89	5	60	55	2	0	42	1.14
3900620--3900653	13	2.6	13	95	0	59	44	5	20	29	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3901148--3901193	22	2.0	23	83	4	58	21	26	30	21	1.99
3909414--3909515	42	2.5	41	85	4	134	32	16	25	25	1.96
3909577--3910183	39	15.7	39	77	8	449	37	14	17	30	1.90
3909843--3910066	80	2.9	77	86	4	299	37	13	16	32	1.87
3917443--3917534	15	6.1	15	74	5	78	31	36	1	30	1.65
3919147--3919185	3	13.0	3	94	0	69	30	0	2	66	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18

The End!