genome.fa.s1991.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001991.1 Hibiscus syriacus cultivar Beakdansim tig00004072_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2373627

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  10  of  13  ( 1445 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1682509--1682601	43	2.2	44	83	11	113	55	0	3	40	1.16
1682520--1682606	37	2.3	39	78	6	97	57	0	2	40	1.11
1688165--1688204	21	1.9	21	94	0	71	30	17	2	50	1.59
1690150--1690189	21	1.9	21	94	0	71	30	17	2	50	1.59
1690786--1690823	20	1.9	20	94	0	67	26	23	18	31	1.97
1699275--1699318	22	2.0	22	82	4	54	29	9	38	22	1.85
1700658--1700713	14	4.3	14	76	17	66	10	12	23	53	1.69
1700665--1700734	24	2.9	24	87	4	97	12	10	18	58	1.62
1701459--1701533	10	7.7	10	69	21	61	9	12	21	57	1.62
1701465--1701529	16	4.1	16	95	0	121	7	12	23	56	1.61
1710235--1710274	14	2.9	14	92	0	62	32	15	45	7	1.74
1711243--1711309	31	2.2	31	86	0	89	23	20	16	38	1.92
1711251--1711319	31	2.2	31	89	2	102	23	18	18	39	1.93
1712341--1712417	20	3.8	21	76	10	88	29	22	16	31	1.96
1712481--1712530	20	2.5	20	93	0	82	40	12	22	26	1.88
1718354--1718495	68	2.1	68	93	0	239	49	7	11	31	1.67
1719982--1720665	228	3.0	229	81	1	775	28	25	25	20	1.99
1730358--1730399	21	2.0	22	95	4	77	38	23	23	14	1.92
1731567--1731608	12	3.4	12	78	15	50	14	21	19	45	1.85
1736650--1736694	21	2.1	21	83	0	54	26	28	11	33	1.91
1736153--1736900	311	2.4	306	81	7	789	36	18	17	27	1.93
1736392--1737759	615	2.2	618	84	4	1714	37	17	15	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1738413--1738460	24	2.0	24	87	0	69	41	6	18	33	1.76
1741309--1741340	13	2.3	15	89	10	50	9	21	3	65	1.35
1742230--1742359	30	4.3	30	91	1	179	33	23	17	24	1.96
1742315--1742410	31	3.1	30	74	12	88	35	20	16	27	1.94
1742809--1742863	22	2.5	22	100	0	110	30	18	3	47	1.66
1748016--1748118	30	3.4	30	97	0	188	32	23	19	25	1.98
1748016--1748143	60	2.1	61	88	1	186	33	24	18	23	1.97
1753616--1753647	13	2.3	15	89	10	50	9	21	3	65	1.35
1756315--1756391	31	2.6	30	81	6	93	44	9	5	41	1.58
1762104--1762160	24	2.5	22	83	10	78	29	8	33	28	1.87
1762106--1762153	24	2.0	24	95	0	87	27	8	39	25	1.84
1766670--1766750	24	3.5	22	79	12	90	33	9	29	27	1.89
1766672--1766743	24	3.0	24	91	0	117	31	9	33	25	1.88
1771052--1771205	20	7.4	20	78	11	123	31	27	16	24	1.96
1771075--1771205	20	6.5	19	78	11	127	32	27	16	24	1.96
1771096--1771170	21	3.6	21	82	10	109	36	26	17	20	1.94
1771076--1771186	41	2.7	41	97	0	204	34	27	16	21	1.95
1774339--1774373	18	1.9	18	94	0	61	54	25	2	17	1.57
1774431--1774713	140	2.0	140	97	0	539	28	12	15	43	1.82
1774684--1774842	20	8.6	20	72	15	126	35	22	16	25	1.95
1774692--1774897	54	3.8	53	85	3	261	35	22	17	23	1.95
1774854--1774897	20	2.2	20	84	4	54	29	25	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1775066--1775097	14	2.3	14	94	0	55	46	18	0	34	1.49
1776507--1776585	21	3.8	21	70	6	61	20	18	37	22	1.94
1776498--1776593	42	2.3	42	75	0	102	25	18	36	19	1.95
1777098--1777146	20	2.5	20	90	6	73	32	26	22	18	1.97
1777151--1777189	19	2.0	20	90	5	62	51	20	15	12	1.76
1777261--1777389	20	6.5	19	94	5	172	16	22	25	35	1.94
1779295--1779357	19	3.2	19	77	4	63	41	23	17	17	1.90
1779736--1779799	22	2.9	22	85	2	92	23	14	40	21	1.90
1779975--1780015	21	2.0	20	85	4	55	29	19	14	36	1.92
1779997--1780046	21	2.4	21	89	0	73	36	20	20	24	1.95
1780007--1780051	21	2.1	21	100	0	90	42	17	22	17	1.89
1780068--1780104	19	1.9	19	88	0	56	24	16	27	32	1.96
1781327--1781720	199	2.0	200	83	3	506	34	13	13	38	1.84
1785381--1785425	18	2.5	19	86	10	60	11	8	6	73	1.25
1786544--1786664	24	5.1	24	87	1	156	28	20	25	24	1.99
1795081--1795130	20	2.5	20	93	6	84	26	16	24	34	1.95
1812480--1812536	28	2.0	28	89	0	87	35	22	14	28	1.93
1812836--1812887	26	2.0	26	96	0	95	38	17	0	44	1.49
1812878--1812968	2	47.0	2	91	6	152	48	1	0	50	1.08
1813142--1813207	29	2.3	29	91	0	105	34	16	12	36	1.86
1817725--1817836	58	1.9	58	83	7	147	44	29	6	19	1.75
1818173--1818199	10	2.7	10	100	0	54	0	29	7	62	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1822564--1822593	15	2.0	15	93	0	51	20	10	23	46	1.80
1826445--1826471	11	2.5	11	100	0	54	74	0	0	25	0.83
1827589--1827640	25	2.1	25	85	3	70	51	1	1	44	1.23
1827600--1827646	25	1.9	25	86	4	69	48	0	2	48	1.13
1831613--1831678	17	3.7	17	73	16	62	45	1	1	51	1.19
1832119--1832248	59	2.3	56	83	9	167	40	6	22	30	1.80
1832967--1832999	4	8.2	4	100	0	66	27	0	24	48	1.51
1835782--1835813	16	2.0	16	93	0	55	40	18	9	31	1.83
1842240--1842278	12	3.4	11	89	7	51	71	2	7	17	1.21
1842512--1842563	27	2.0	26	88	3	77	28	21	17	32	1.96
1843892--1844073	41	4.5	41	73	10	185	18	22	24	35	1.96
1843994--1844070	20	3.8	20	79	3	100	15	22	23	38	1.92
1844704--1844791	6	15.5	6	98	1	141	0	17	53	29	1.44
1844788--1844824	6	6.2	6	100	0	74	32	0	32	35	1.58
1844873--1844926	21	2.6	21	88	5	74	29	29	20	20	1.98
1847464--1847519	29	2.0	28	96	3	103	33	14	19	32	1.92
1850046--1850159	20	5.6	20	66	20	65	22	0	14	63	1.30
1850082--1850164	12	6.5	13	73	22	70	21	0	14	63	1.29
1850049--1850169	63	2.0	59	87	6	170	23	0	13	62	1.35
1850079--1850174	13	7.6	12	72	17	61	22	2	12	62	1.40
1852829--1852886	23	2.5	23	97	0	107	31	12	31	25	1.92
1855728--1855862	60	2.3	58	81	10	157	42	4	16	36	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1856008--1856097	29	3.1	30	67	6	85	33	16	4	45	1.68
1856000--1856183	60	3.1	60	83	7	191	34	17	4	43	1.70
1856473--1856502	2	14.5	2	93	6	51	50	3	0	46	1.18
1857911--1857936	4	6.5	4	100	0	52	0	26	50	23	1.50
1865429--1865478	21	2.4	21	80	16	59	46	24	0	30	1.53
1865499--1865552	24	2.3	24	87	3	74	38	5	11	44	1.63
1865669--1865722	2	27.5	2	89	10	85	48	1	0	50	1.11
1866749--1866802	3	18.0	3	100	0	108	33	0	0	66	0.92
1869304--1869413	53	2.1	53	98	0	211	31	22	13	31	1.93
1871533--1871609	21	3.7	21	91	0	118	24	24	19	31	1.98
1871684--1871811	64	2.0	65	87	10	190	35	18	18	26	1.94
1872495--1872557	23	2.7	23	80	4	65	20	26	28	23	1.99
1878594--1878670	21	3.7	21	91	0	127	25	27	18	28	1.98
1878701--1878861	64	2.5	63	82	5	180	34	17	21	27	1.95
1879322--1879549	103	2.2	103	96	0	420	25	13	24	37	1.91
1879555--1879616	23	2.7	23	82	7	74	19	27	29	24	1.98
1881891--1881934	21	2.2	20	84	12	54	72	2	9	15	1.19
1903085--1903316	77	3.0	77	96	0	419	35	7	21	35	1.82
1909700--1909736	17	2.2	17	95	0	65	29	16	2	51	1.58
1910836--1911398	171	3.3	173	86	3	769	36	16	20	26	1.93
1917322--1917351	2	15.0	2	100	0	60	50	0	50	0	1.00
1919060--1919094	2	18.0	2	94	5	63	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1919872--1919923	19	2.6	20	79	11	54	44	0	3	51	1.19
1923172--1923200	2	14.5	2	100	0	58	48	0	0	51	1.00
1924942--1925141	42	5.2	42	73	18	200	25	4	16	53	1.62
1925016--1925119	34	3.1	34	90	0	172	25	4	17	52	1.63
1933402--1933495	47	2.0	47	91	0	152	34	21	14	29	1.93
1945246--1945275	14	2.1	14	93	0	51	36	6	33	23	1.81
1946761--1946960	96	2.1	96	97	0	373	28	13	20	38	1.89
1954576--1954624	2	24.0	2	95	4	89	48	0	2	48	1.12
1958325--1958385	26	2.4	26	82	15	83	36	6	1	55	1.36
1962913--1962970	20	2.7	20	86	10	71	27	22	18	31	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13