Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002352.1 Hibiscus syriacus cultivar Beakdansim tig00004797_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2012169

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1099 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1985559--1985608
10
4.7
11
78
7
59
72
4
0
24
1.02
1985559--1985608
21
2.4
22
83
10
68
72
4
0
24
1.02
1987046--1987183
68
2.0
68
97
0
258
33
9
12
44
1.74
1990858--1990922
28
2.3
28
97
0
121
38
15
15
30
1.88
1991134--1991170
11
3.3
11
92
3
56
70
2
2
24
1.14
1992943--1993215
69
4.0
69
74
8
238
28
21
24
25
1.99
1996264--1996304
21
2.0
21
95
0
73
24
26
9
39
1.86
1997338--1997368
15
2.1
15
93
0
53
64
0
0
35
0.94
1997783--1997852
24
3.2
24
61
23
62
34
32
11
21
1.89
1997778--1997866
42
2.1
43
91
2
144
32
31
11
24
1.90
2003028--2003256
69
3.3
67
77
4
242
24
19
26
29
1.98
2003028--2003276
138
1.8
138
84
0
345
24
20
25
28
1.99
2006761--2006840
31
2.6
31
82
4
90
42
2
3
51
1.33
2006794--2006843
20
2.5
20
78
12
59
40
4
2
54
1.31
2006780--2006847
31
2.2
31
86
2
91
41
2
2
52
1.31
2007566--2007652
31
2.8
30
81
10
95
54
3
1
41
1.25
2007561--2007628
19
3.5
20
73
15
54
54
1
2
41
1.24
2011785--2011823
21
1.9
21
84
5
53
51
10
2
35
1.50
2012011--2012169
3
52.3
3
92
7
268
0
32
0
67
0.91

Tables:   1   2   3   4   5   6   7   8   9   10

The End!