genome.fa.s2352.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002352.1 Hibiscus syriacus cultivar Beakdansim tig00004797_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2012169

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  2  of  10  ( 1099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
312114--312146	15	2.2	15	94	0	57	30	33	21	15	1.94
312291--312336	12	3.8	12	91	0	56	39	26	6	28	1.81
312291--312337	24	2.0	24	87	8	69	38	25	6	29	1.81
312304--312337	12	2.8	12	95	0	59	41	26	2	29	1.70
312646--312824	64	2.8	63	83	5	216	25	19	22	32	1.97
312709--312870	64	2.5	64	84	6	195	25	21	20	32	1.98
317361--317401	12	3.4	12	78	21	50	60	2	0	36	1.10
318399--318480	3	26.7	3	82	4	83	57	0	0	42	0.98
318399--318480	24	3.5	24	88	1	112	57	0	0	42	0.98
318711--319232	113	4.7	113	87	3	664	28	18	15	37	1.91
318711--319267	226	2.5	225	86	2	746	28	18	15	37	1.91
319954--320225	94	2.9	91	87	6	411	34	20	14	30	1.93
321087--321136	17	3.0	16	88	5	64	2	12	0	86	0.67
321095--321120	10	2.6	10	100	0	52	0	7	0	92	0.39
328451--328482	15	2.1	15	94	0	55	46	9	18	25	1.79
333079--333116	16	2.5	16	91	8	62	0	39	0	60	0.97
333080--333109	9	3.3	9	95	0	51	0	40	0	60	0.97
333754--333830	3	25.0	3	81	5	91	59	0	0	40	0.97
333752--333839	12	7.5	12	79	13	85	59	0	0	40	0.98
338361--338390	14	2.1	14	93	0	51	80	0	3	16	0.85
340324--340454	67	2.0	67	92	0	217	42	16	18	22	1.89
350074--350108	17	2.1	17	100	0	70	62	11	11	14	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
355482--355510	2	14.5	2	100	0	58	51	0	0	48	1.00
355778--355996	51	4.3	51	79	6	230	52	13	10	23	1.72
355776--355996	103	2.2	102	84	4	277	52	14	10	23	1.72
356035--356089	2	29.5	2	77	14	55	49	1	1	47	1.23
357125--357157	2	16.5	2	100	0	66	48	0	0	51	1.00
357290--357348	30	1.9	32	86	6	86	11	15	1	71	1.23
358164--358201	20	1.9	20	100	0	76	15	28	42	13	1.85
358167--358210	20	2.2	20	87	0	61	18	31	43	6	1.76
367507--367659	73	2.2	72	87	5	215	51	7	24	16	1.70
367682--367750	8	8.2	8	74	15	59	79	1	15	2	0.92
367507--367697	73	2.7	73	82	6	187	51	9	23	15	1.72
367684--367744	17	3.4	17	82	11	68	81	1	14	1	0.84
367682--367743	19	3.3	18	77	22	58	80	1	16	1	0.87
367683--367744	27	2.3	27	86	8	81	82	1	14	1	0.83
368834--369110	109	2.6	106	79	8	319	35	23	17	23	1.96
372032--372070	10	3.7	10	83	12	51	33	2	0	64	1.08
373143--373195	19	2.8	19	97	0	97	50	18	16	13	1.77
373245--373291	21	2.2	21	84	0	67	19	27	17	36	1.93
373287--373354	20	3.4	20	85	4	93	35	23	22	19	1.96
373302--373362	20	3.0	20	83	4	79	34	21	21	22	1.97
374030--374083	24	2.2	24	90	0	81	20	18	18	42	1.89
376515--376623	20	5.4	21	86	6	156	34	24	22	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376628--376740	19	6.4	19	69	20	84	46	16	21	15	1.84
376606--376706	52	1.9	52	89	0	157	45	16	21	15	1.85
376666--376720	14	3.6	14	73	21	56	41	20	23	14	1.89
376649--376742	33	2.8	33	96	1	170	43	18	23	14	1.87
376757--376852	33	2.9	34	90	3	149	14	23	19	41	1.89
376954--376990	14	2.6	14	86	0	56	48	21	0	29	1.50
378353--378443	42	2.2	42	80	4	103	23	16	38	21	1.93
378925--378993	20	3.5	20	91	0	102	36	23	20	20	1.95
379201--379580	94	4.1	94	95	1	647	47	18	11	21	1.80
381253--381308	20	2.8	20	84	10	87	39	21	25	14	1.91
381344--381413	33	2.1	33	91	0	113	11	21	18	48	1.79
381390--381466	20	3.8	21	84	5	81	11	18	18	51	1.75
381961--382172	20	10.6	20	73	8	171	20	17	23	38	1.93
381963--382172	41	5.2	41	84	4	268	20	17	22	39	1.93
382090--382172	21	4.0	21	78	9	80	20	15	24	39	1.91
382181--382233	20	2.7	20	91	5	81	13	18	24	43	1.86
382201--382294	42	2.3	42	76	9	95	21	21	22	35	1.96
382283--382336	20	2.7	19	75	8	63	16	18	31	33	1.93
383234--383327	20	4.7	20	72	7	73	35	23	15	25	1.95
383908--384086	19	9.8	19	73	13	144	13	22	18	44	1.85
383974--384061	33	2.6	33	92	1	140	13	27	20	38	1.90
387652--387678	14	1.9	14	100	0	54	37	0	25	37	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387843--387993	19	8.7	19	63	21	71	15	21	20	41	1.90
387847--387973	33	3.9	32	85	8	184	15	22	19	42	1.89
387848--387972	66	1.9	66	98	0	241	16	21	20	42	1.89
390462--390514	24	2.2	24	89	0	79	39	20	16	22	1.92
391497--391546	19	2.5	20	96	3	93	32	28	24	16	1.96
391609--391647	20	2.0	20	94	0	69	12	10	30	46	1.75
391730--391780	14	3.6	14	91	0	75	45	21	0	33	1.52
393631--393696	19	3.5	19	79	8	80	39	24	22	13	1.90
393685--393742	14	3.9	14	79	16	71	48	24	17	10	1.78
393669--393747	32	2.4	33	95	2	142	46	22	18	11	1.81
393775--393831	14	3.9	14	77	18	62	10	17	24	47	1.79
393759--393847	32	2.8	32	93	5	153	12	19	22	46	1.83
393832--393886	20	2.8	19	83	8	65	16	23	23	36	1.94
394168--394212	18	2.5	18	88	0	72	13	15	44	26	1.83
395636--395694	20	3.0	20	87	0	73	42	22	18	16	1.89
395951--395997	22	2.2	21	88	7	69	25	14	38	21	1.92
396188--396297	20	5.7	20	88	6	127	27	19	27	26	1.99
396189--396297	37	2.8	40	81	8	134	27	19	27	25	1.99
396187--396297	57	1.9	57	85	0	150	27	18	27	27	1.98
396168--396298	20	6.7	20	85	7	126	26	18	25	29	1.98
396168--396298	40	3.3	39	78	9	142	26	18	25	29	1.98
412378--412451	18	4.2	18	79	3	80	27	17	10	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412377--412451	36	2.1	35	90	2	114	26	17	10	45	1.81
416470--416526	21	3.0	19	85	14	82	31	10	7	50	1.63
416739--416813	20	4.0	18	73	16	55	24	28	20	28	1.99
416740--416810	36	1.9	37	88	8	110	23	28	19	28	1.99
416840--416895	20	2.8	21	86	10	73	30	30	16	23	1.96
418486--418619	18	7.6	18	76	8	123	28	17	8	45	1.78
418493--418618	17	7.2	17	74	7	101	28	16	9	45	1.79
418493--418585	35	2.7	35	87	0	141	27	16	8	47	1.75
419117--419320	42	4.8	41	79	11	182	28	18	4	48	1.69
419117--419320	85	2.4	84	80	10	220	28	18	4	48	1.69
419849--419894	2	23.0	2	93	0	74	52	2	0	45	1.13
420023--420049	3	9.0	3	100	0	54	33	0	0	66	0.92
430768--430825	20	2.7	20	81	10	62	29	20	24	25	1.99
432314--432377	21	3.0	21	73	13	67	17	23	23	35	1.95
437303--437370	23	3.0	23	82	0	91	19	23	26	30	1.98
437564--437798	66	3.6	66	82	3	278	32	17	12	37	1.87
437708--438043	102	3.3	102	83	5	374	32	17	12	37	1.88
442083--442130	18	2.7	18	80	9	53	31	22	22	22	1.99
446196--446238	5	8.6	5	100	0	86	60	0	0	39	0.97
447914--448086	86	2.0	86	87	0	247	30	21	19	29	1.97
452583--452632	18	2.6	19	81	6	57	28	14	26	32	1.94
453898--453979	26	3.2	26	94	0	137	34	17	21	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
460368--460396	11	2.5	12	88	11	51	20	13	0	65	1.26
464627--464746	51	2.4	51	80	2	125	19	30	28	22	1.98
468339--468424	35	2.5	34	78	12	86	56	10	8	24	1.59
468643--468698	3	18.7	3	84	0	67	7	35	25	32	1.83
471143--471184	22	1.9	22	85	0	57	52	2	2	42	1.27
473412--473580	84	2.0	84	100	0	338	40	13	15	31	1.85
476471--476502	15	2.0	17	88	11	50	31	15	6	46	1.71
479790--479994	80	2.5	80	85	6	256	51	9	6	32	1.60
479790--480025	80	2.9	80	79	9	189	50	10	7	31	1.64
480705--480810	20	5.2	20	82	6	106	31	25	18	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10