genome.fa.s2352.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002352.1 Hibiscus syriacus cultivar Beakdansim tig00004797_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2012169

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  6  of  10  ( 1099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1056573--1057630	543	1.9	543	90	1	1672	36	15	14	33	1.88
1059983--1060041	21	2.8	21	79	5	66	22	11	20	45	1.83
1060941--1060976	2	18.0	2	100	0	72	50	0	0	50	1.00
1062216--1062288	18	3.9	18	71	13	67	24	17	28	28	1.98
1070266--1070335	30	2.3	30	80	7	79	35	8	21	34	1.84
1071270--1071391	59	2.1	59	87	0	172	30	18	22	28	1.97
1071514--1071687	45	3.9	45	89	3	264	39	5	21	32	1.77
1072339--1072375	13	2.8	13	91	0	56	29	21	13	35	1.92
1072340--1072380	13	3.2	13	89	0	55	31	24	12	31	1.92
1072539--1072567	2	14.5	2	100	0	58	48	0	0	51	1.00
1083618--1083645	8	3.5	8	100	0	56	14	10	10	64	1.50
1083618--1083653	16	2.2	16	90	0	54	16	8	8	66	1.42
1090515--1090582	34	2.0	34	100	0	136	52	14	5	26	1.64
1096660--1097042	54	7.2	54	76	8	367	28	12	17	40	1.87
1096657--1097021	158	2.3	158	86	1	536	28	12	17	41	1.87
1097172--1097253	41	2.0	42	90	7	132	47	10	9	31	1.71
1097181--1097243	19	3.0	22	64	17	53	46	12	9	31	1.74
1097194--1097273	19	4.1	19	76	9	88	53	7	10	28	1.61
1098611--1098679	16	4.3	15	71	20	50	59	0	2	37	1.12
1103079--1103107	14	2.1	14	100	0	58	34	17	27	20	1.95
1110030--1110056	6	4.5	6	100	0	54	14	14	14	55	1.70
1114801--1115638	123	6.9	123	84	3	1004	40	15	17	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1114801--1115590	243	3.3	244	86	3	1023	40	15	17	26	1.90
1115384--1115591	114	1.8	115	85	3	294	43	13	19	23	1.86
1115538--1115936	119	3.3	119	87	1	584	38	15	20	25	1.92
1119831--1119877	17	2.8	17	80	0	58	61	0	0	38	0.96
1128732--1129241	74	6.9	74	87	2	677	33	16	12	38	1.86
1128732--1129136	36	11.0	36	75	6	353	32	16	12	38	1.86
1129087--1129522	179	2.4	179	85	3	576	34	15	11	38	1.83
1129723--1129881	59	2.7	59	87	0	219	25	23	15	35	1.94
1129723--1129900	59	3.0	59	84	1	151	26	24	15	33	1.95
1132273--1132450	42	4.2	42	83	6	182	32	16	23	28	1.96
1137419--1137490	24	3.0	23	73	2	63	19	11	15	54	1.70
1137418--1137477	12	5.0	12	76	8	50	18	15	16	50	1.79
1138929--1139001	30	2.4	30	93	0	119	30	23	20	26	1.99
1138987--1139114	31	4.1	31	78	9	143	34	21	18	25	1.96
1140486--1140530	21	2.1	21	87	0	63	15	24	28	31	1.96
1143792--1143849	29	2.0	29	100	0	116	31	24	20	24	1.98
1143849--1143967	28	4.1	30	65	19	81	35	21	17	26	1.95
1145300--1145342	21	2.1	20	86	4	59	16	25	25	32	1.96
1145290--1145393	51	2.0	51	100	0	208	13	23	25	38	1.91
1145351--1145394	21	2.2	20	87	4	61	15	25	27	31	1.96
1146052--1146114	3	21.7	3	93	6	112	66	0	0	33	0.92
1147016--1147358	41	8.4	41	75	7	268	34	18	19	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1147005--1147243	123	1.9	123	86	2	336	37	18	17	26	1.93
1147005--1147295	123	2.4	123	81	4	320	35	18	18	27	1.95
1153743--1153779	11	3.4	11	100	0	74	51	0	18	29	1.47
1155109--1155157	5	9.8	5	84	8	64	75	0	6	18	1.00
1156423--1156857	227	1.9	226	86	2	622	30	20	15	33	1.94
1161700--1161741	15	2.6	16	82	17	52	33	4	0	61	1.17
1161804--1161828	4	6.2	4	100	0	50	24	0	0	76	0.80
1166002--1166030	2	15.0	2	92	7	51	51	0	0	48	1.00
1166723--1166823	44	2.3	44	88	3	152	25	13	23	36	1.92
1167924--1168334	62	6.5	62	85	3	500	27	24	16	31	1.96
1168338--1169064	89	8.2	89	82	3	784	31	16	19	32	1.94
1168338--1169064	355	2.0	356	84	2	951	31	16	19	32	1.94
1169161--1171200	82	25.0	82	82	3	2137	40	19	16	23	1.91
1169161--1171200	736	2.8	734	84	3	2552	40	19	16	23	1.91
1171410--1171437	6	4.7	6	100	0	56	35	28	0	35	1.58
1171435--1171481	3	15.7	3	100	0	94	34	0	0	65	0.93
1172599--1172650	23	2.4	22	84	9	70	30	3	7	57	1.45
1174886--1174943	28	2.1	28	83	6	73	74	1	15	8	1.14
1180357--1180382	3	8.7	3	100	0	52	34	0	0	65	0.93
1181886--1181924	20	2.0	20	89	0	60	51	7	17	23	1.71
1181938--1182098	25	6.4	26	75	11	138	43	14	15	26	1.85
1181955--1182114	75	2.1	76	92	1	268	45	14	17	22	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1182007--1182110	25	4.2	25	70	14	70	49	15	14	21	1.80
1185421--1185457	20	1.9	19	89	10	58	45	10	24	18	1.81
1185893--1185954	2	31.5	2	75	15	58	45	4	1	48	1.33
1188536--1188577	17	2.5	17	100	0	84	14	26	16	42	1.86
1189066--1189105	13	2.9	14	85	7	55	77	0	10	12	0.99
1197960--1197986	7	3.9	7	100	0	54	11	29	29	29	1.91
1208277--1208336	30	2.0	30	86	0	84	25	28	20	26	1.99
1209276--1209325	3	16.7	3	83	8	66	34	0	0	66	0.92
1209255--1209301	15	3.2	15	84	3	60	21	0	2	76	0.89
1209333--1209386	26	2.1	26	85	0	72	42	31	16	9	1.80
1210464--1210541	22	3.6	22	75	16	74	26	3	2	66	1.22
1210810--1210862	27	2.0	27	84	0	70	39	1	0	58	1.09
1210839--1210871	17	1.9	17	93	0	57	39	0	0	60	0.97
1213284--1213501	114	1.9	114	93	0	373	32	16	22	29	1.96
1215562--1215835	54	5.1	54	88	0	404	39	14	21	24	1.91
1215563--1215835	108	2.5	108	95	0	474	39	14	21	24	1.91
1216196--1216250	22	2.5	22	90	0	92	34	12	14	38	1.84
1216928--1218098	76	15.4	76	96	0	2103	22	21	21	35	1.96
1218237--1218289	3	17.7	3	84	7	72	33	0	0	66	0.92
1218296--1218349	26	2.1	26	85	0	72	42	33	14	9	1.78
1219674--1219738	3	23.3	3	75	17	52	24	1	3	70	1.10
1219637--1219738	48	2.1	47	80	8	109	24	4	2	67	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1219681--1219739	22	2.8	22	77	15	70	23	1	3	71	1.11
1220042--1220080	18	2.2	17	86	4	51	41	0	0	58	0.98
1220028--1220080	26	2.0	26	82	7	63	41	0	0	58	0.98
1222489--1222566	31	2.5	31	80	0	84	24	10	11	53	1.67
1223939--1224016	31	2.5	31	81	4	95	51	12	12	23	1.74
1224346--1224387	20	2.2	19	86	4	57	35	16	7	40	1.76
1234006--1234038	17	2.1	17	88	11	52	9	6	33	51	1.58
1240127--1240257	67	2.0	67	92	0	217	39	23	9	26	1.86
1240346--1243189	4	724.8	4	94	4	5055	49	25	0	24	1.53
1244488--1244567	2	40.0	2	95	5	144	50	1	0	48	1.08
1246239--1246303	20	3.2	20	73	2	67	21	21	24	32	1.98
1257445--1257496	24	2.2	23	86	3	68	61	1	17	19	1.44
1265415--1265490	24	3.2	22	74	17	64	44	0	22	32	1.53
1265474--1265527	24	2.3	24	87	3	74	42	0	20	37	1.52
1265425--1265525	49	2.1	49	81	7	116	44	0	19	35	1.51
1267275--1267771	81	6.1	81	86	1	649	30	20	11	37	1.88
1272000--1272047	20	2.4	20	100	0	96	18	29	10	41	1.84
1272014--1272140	45	2.8	47	83	8	156	23	26	11	38	1.88
1272121--1272366	34	6.6	34	76	20	215	28	24	11	34	1.90
1272065--1272332	79	3.4	79	90	0	419	27	25	11	35	1.91
1272149--1272588	45	10.6	41	72	22	224	28	25	11	34	1.91
1272201--1272408	113	1.8	113	96	0	389	28	25	11	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1272386--1272427	19	2.2	19	100	0	84	35	30	11	21	1.90
1272306--1272506	98	2.1	98	95	0	357	28	26	12	32	1.92
1272404--1272598	34	5.1	34	69	24	138	28	24	10	36	1.89
1272405--1272598	79	2.5	79	94	1	345	28	24	10	36	1.89
1273008--1273066	19	2.9	19	80	11	73	28	23	15	32	1.95
1273091--1273142	20	2.6	21	81	9	72	23	30	13	32	1.93
1274486--1274692	43	4.8	43	76	7	170	24	17	23	34	1.96
1274475--1274679	86	2.4	86	79	8	227	24	16	24	35	1.95
1274723--1274756	16	2.1	16	100	0	68	44	29	11	14	1.81
1275110--1275162	21	2.5	21	78	0	52	1	35	18	43	1.62

Tables:   1   2   3   4   5   6   7   8   9   10