genome.fa.s2352.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002352.1 Hibiscus syriacus cultivar Beakdansim tig00004797_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2012169

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  4  of  10  ( 1099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
616906--616973	14	4.9	15	73	20	51	52	0	4	42	1.21
616924--616957	15	2.3	15	90	10	52	58	0	5	35	1.22
617735--617801	30	2.3	27	77	10	71	46	1	1	50	1.19
618346--618389	21	2.1	21	100	0	88	50	18	9	22	1.75
622946--623105	57	2.9	55	82	6	196	31	21	16	31	1.95
622946--623125	55	3.2	56	81	6	204	28	22	16	32	1.96
623170--623931	215	3.5	215	89	2	1161	32	20	16	31	1.94
623629--623725	42	2.3	41	80	5	106	31	21	23	22	1.98
623844--623930	42	2.1	41	82	2	102	29	21	22	25	1.99
623969--624121	37	4.1	37	89	4	211	20	16	20	41	1.90
626157--626185	2	15.0	2	92	7	51	48	0	0	51	1.00
630375--630429	21	2.6	21	94	2	92	18	14	23	43	1.87
630375--630437	21	3.0	21	88	6	74	17	15	20	46	1.85
635801--636012	35	5.8	34	77	18	119	46	2	9	41	1.51
635847--636115	35	7.3	36	82	11	259	43	3	11	41	1.59
635891--636113	38	6.1	37	83	14	270	42	4	12	40	1.61
636105--636146	2	21.5	2	95	4	77	50	0	0	50	1.00
636191--636253	5	13.2	5	79	14	62	36	0	1	61	1.05
636190--636253	17	3.7	18	74	23	66	35	0	1	62	1.05
636190--636272	22	3.8	22	73	21	59	32	1	1	65	1.08
637492--637539	19	2.5	19	89	0	69	29	0	0	70	0.87
637523--637574	23	2.2	24	80	10	63	28	0	7	63	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
639134--639159	13	2.0	13	100	0	52	15	15	23	46	1.83
640392--640434	21	2.0	22	90	4	70	23	11	9	55	1.64
645922--645957	16	2.2	16	90	0	54	27	5	0	66	1.13
646047--646083	18	2.1	19	90	10	60	32	2	0	64	1.07
647199--647228	15	2.0	15	100	0	60	60	0	20	20	1.37
647202--647236	15	2.3	15	90	0	52	65	0	17	17	1.27
647334--647370	15	2.5	15	91	4	58	86	0	13	0	0.57
647338--647399	15	4.1	14	77	10	52	82	1	8	8	0.91
647327--647439	39	2.9	39	81	3	113	77	0	7	14	1.01
647321--647407	27	3.2	25	72	19	68	79	1	8	11	0.99
647315--647443	9	13.4	9	69	16	55	76	0	6	16	1.02
647354--647459	39	2.7	39	88	1	140	72	0	3	22	1.06
647509--647575	23	2.9	23	82	6	73	71	4	4	19	1.20
647877--647978	34	2.9	36	86	7	163	28	14	12	44	1.82
648526--649043	106	5.0	105	89	3	724	22	17	25	34	1.96
649686--649843	68	2.4	65	83	6	192	36	8	22	32	1.85
649687--649870	65	2.8	67	80	5	178	38	8	22	30	1.84
649852--649882	15	2.1	15	93	0	53	41	9	19	29	1.83
649819--650135	36	9.0	35	78	10	297	39	13	19	26	1.90
649770--650079	138	2.2	138	81	2	345	39	12	20	28	1.88
650013--650075	21	3.3	21	64	25	57	38	14	20	26	1.91
649956--650177	72	3.1	72	87	3	297	36	15	20	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
651065--651135	22	3.2	22	95	0	124	28	14	23	33	1.94
651737--651776	16	2.4	17	87	8	64	0	15	10	75	1.05
651737--651838	38	2.9	33	74	22	100	0	12	10	76	1.02
651741--651833	16	5.9	16	73	20	56	0	11	10	77	1.00
651765--651816	13	4.2	12	83	16	70	0	7	11	80	0.89
651765--651833	24	2.8	25	79	16	72	0	10	11	78	0.97
652929--652967	8	5.0	8	84	6	53	58	12	17	10	1.61
652929--652967	15	2.5	15	87	4	51	58	12	17	10	1.61
654746--654775	15	2.0	15	100	0	60	60	0	20	20	1.37
654749--654783	15	2.3	15	90	0	52	65	0	17	17	1.27
654872--654935	28	2.3	28	78	10	69	79	1	7	10	0.99
654862--654980	9	13.5	8	69	18	51	76	0	5	16	1.03
654924--654986	30	2.1	29	85	5	81	73	0	3	23	0.98
654885--654996	39	2.8	39	85	4	136	73	0	5	20	1.09
655055--655115	23	2.7	23	79	18	67	68	4	4	21	1.27
655411--655515	34	2.9	36	84	7	160	30	14	11	43	1.80
662208--662351	58	2.5	56	89	6	227	45	4	6	42	1.52
663658--663696	20	2.0	19	85	5	51	76	7	5	10	1.13
663821--663848	3	9.3	3	100	0	56	67	0	32	0	0.91
664855--665149	102	2.9	102	79	5	308	31	3	31	32	1.76
665553--666159	2	304.0	2	65	19	220	46	3	4	46	1.39
665903--666069	33	4.8	33	70	16	106	48	5	3	42	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
667784--667817	4	8.5	4	100	0	68	23	0	0	76	0.79
668063--668088	2	13.0	2	100	0	52	50	0	0	50	1.00
672283--672307	3	8.3	3	100	0	50	68	32	0	0	0.90
674035--674118	23	3.8	22	75	9	73	13	11	15	59	1.61
674053--674090	20	1.9	20	88	0	58	7	15	21	55	1.66
678199--678232	18	1.9	17	94	5	59	70	5	5	17	1.28
679206--679254	23	2.3	23	82	10	68	2	18	4	75	1.06
679206--679274	21	3.2	21	74	11	59	2	18	5	72	1.18
679693--679747	3	18.7	3	96	3	103	69	0	0	30	0.89
680090--680272	98	1.9	99	89	3	289	26	16	27	28	1.97
690253--690457	107	1.9	105	96	3	376	34	30	9	25	1.87
692986--693024	18	2.2	18	86	4	62	71	5	5	17	1.23
694001--694051	20	2.6	19	76	14	50	3	17	9	68	1.33
694467--694551	3	28.7	3	92	7	147	68	0	0	31	0.90
695700--695877	89	2.0	89	97	0	338	36	10	11	41	1.77
699838--699874	16	2.3	17	86	9	51	67	5	2	24	1.25
701478--701660	96	1.9	96	83	6	237	24	18	26	31	1.97
704800--704872	30	2.4	30	95	0	128	26	6	0	67	1.16
719077--719148	34	2.2	31	85	11	92	72	4	18	5	1.21
722316--722380	29	2.2	29	84	10	80	73	3	15	7	1.18
725846--725889	20	2.3	19	88	4	61	25	9	0	65	1.21
726137--726185	19	2.7	19	87	9	68	73	6	12	8	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
726141--726219	34	2.3	34	85	8	99	74	3	15	6	1.16
726143--726224	19	4.6	19	71	18	59	73	3	17	6	1.19
728110--728281	86	2.0	86	100	0	344	29	25	15	30	1.96
728960--729008	18	2.5	19	83	16	64	69	0	6	24	1.11
729417--729468	19	2.6	21	90	6	81	46	5	13	34	1.67
731133--731184	21	2.6	21	90	6	81	34	13	5	46	1.67
731596--731634	19	2.1	19	90	9	62	25	10	0	64	1.25
731592--731640	19	2.5	20	78	21	59	26	8	0	65	1.20
731891--731922	17	1.9	17	93	6	57	78	6	15	0	0.95
731901--731967	28	2.3	29	83	14	86	76	4	13	5	1.13
732696--732770	37	2.2	34	80	17	93	37	18	24	20	1.94
732708--732783	37	2.1	37	95	5	136	36	21	21	21	1.95
733458--733496	18	2.0	20	90	9	64	23	10	0	66	1.22
733454--733502	18	2.5	20	78	21	59	24	8	0	67	1.18
733764--733833	28	2.4	29	84	11	83	71	4	17	7	1.25
737296--737326	7	4.6	7	96	4	55	74	9	16	0	1.07
740310--740343	2	17.5	2	93	6	61	50	0	0	50	1.00
747908--747932	13	1.9	13	100	0	50	36	0	32	32	1.58
751938--751986	11	4.2	11	78	21	55	28	0	36	34	1.58
751923--752004	36	2.3	35	81	10	87	31	3	30	34	1.75
756629--756683	20	2.7	21	82	2	76	41	5	12	40	1.66
759686--759734	18	2.7	17	81	12	53	4	14	4	77	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
763547--763596	18	2.8	17	82	11	55	4	14	6	76	1.13
767334--767482	74	2.0	75	98	1	291	32	22	12	32	1.91
768603--768650	19	2.5	19	77	16	53	4	16	4	75	1.12
768576--768649	35	2.2	33	83	13	96	5	16	4	74	1.16
771968--772039	34	2.2	32	85	11	94	5	16	4	73	1.18
779396--779440	19	2.3	20	85	11	58	28	22	13	35	1.92
787216--787253	20	1.9	20	88	0	58	57	5	7	28	1.49
788583--788630	25	1.9	25	87	8	71	14	12	4	68	1.34
789828--789924	39	2.5	39	82	0	122	32	17	26	22	1.96
792885--792937	21	2.5	21	84	3	70	28	22	24	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10