genome.fa.s2352.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002352.1 Hibiscus syriacus cultivar Beakdansim tig00004797_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2012169

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  3  of  10  ( 1099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481363--481404	19	2.2	19	91	0	66	52	26	16	4	1.63
481400--481584	19	10.1	19	74	14	147	12	21	21	44	1.85
481400--481489	39	2.3	39	92	1	146	13	18	20	47	1.82
481419--481500	39	2.1	39	84	6	105	9	20	25	43	1.82
481472--481559	33	2.6	33	92	1	140	11	25	25	38	1.89
481527--481584	20	2.9	20	80	10	64	13	24	18	43	1.87
483583--483705	42	2.9	42	80	2	122	22	36	17	22	1.95
483639--483705	21	3.2	21	66	6	55	23	35	20	19	1.95
485065--485100	14	2.6	14	90	0	54	27	0	25	47	1.52
485285--485388	19	6.0	19	64	21	66	15	23	18	43	1.87
485278--485377	33	3.1	32	80	10	114	16	23	19	42	1.89
487688--487712	12	2.1	12	100	0	50	0	28	0	72	0.86
487887--487940	24	2.2	24	90	0	81	38	20	16	24	1.92
488977--489014	20	1.9	20	94	0	67	39	23	21	15	1.92
489009--489062	19	2.8	19	97	0	99	44	16	22	16	1.86
489057--489110	14	3.5	14	77	22	63	11	20	20	48	1.80
489052--489129	33	2.4	33	91	0	120	12	23	21	42	1.87
489217--489253	14	2.6	14	86	0	56	48	21	0	29	1.50
491121--491187	19	3.5	19	79	4	80	38	23	22	14	1.92
491103--491186	19	4.4	19	77	5	71	40	25	19	15	1.90
491176--491233	14	3.9	14	77	16	62	48	24	17	10	1.78
491160--491238	32	2.4	33	93	2	133	46	22	18	11	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
491267--491324	14	3.9	14	75	16	62	12	17	22	48	1.80
491250--491340	32	2.8	33	91	3	157	13	18	20	47	1.82
491334--491380	20	2.3	21	88	3	69	17	19	25	38	1.92
491862--491906	18	2.5	18	88	0	72	13	15	44	26	1.83
493226--493268	20	2.2	20	100	0	86	55	18	16	9	1.67
493736--493873	41	3.4	41	78	2	134	24	17	23	34	1.96
493736--493870	20	6.7	20	78	4	110	25	17	23	33	1.96
493859--493934	21	3.7	21	76	3	91	15	25	17	42	1.88
493878--493951	20	3.7	20	78	3	85	17	22	17	41	1.89
493859--493951	41	2.3	41	98	0	177	17	24	17	40	1.90
504789--504964	20	8.9	19	71	13	63	38	23	16	21	1.93
504850--504922	20	3.7	20	87	3	94	39	19	19	21	1.92
504913--504964	20	2.6	19	85	8	77	38	26	19	15	1.91
505087--505137	22	2.3	22	86	0	75	19	43	21	15	1.88
505478--505521	20	2.2	20	87	0	61	56	22	9	11	1.62
507096--507148	21	2.5	21	96	0	97	33	39	15	11	1.83
507725--507797	21	3.5	21	79	7	85	21	35	20	21	1.96
507717--507797	42	1.9	42	92	0	135	20	35	19	23	1.96
509201--509250	20	2.5	20	96	0	91	44	10	28	18	1.81
509277--509365	20	4.4	20	82	0	106	13	17	21	47	1.82
509532--509683	40	3.8	40	84	0	187	12	15	24	47	1.80
509532--509683	20	7.6	20	81	0	169	12	15	24	47	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
513163--513225	27	2.3	27	91	0	108	23	3	31	41	1.70
513261--513307	20	2.3	20	88	0	67	34	14	23	27	1.94
513381--513450	20	3.5	20	83	11	81	22	15	18	42	1.88
514083--514139	5	11.4	5	98	0	87	26	0	73	0	0.83
514930--514967	17	2.2	17	86	9	51	28	5	0	65	1.14
514990--515014	2	12.5	2	100	0	50	48	0	0	52	1.00
515158--515253	46	2.1	46	82	3	113	27	12	12	47	1.77
516968--517135	31	5.4	31	81	2	176	23	9	13	53	1.68
518897--518995	29	3.3	29	84	2	99	40	25	8	26	1.83
518996--519034	18	2.2	18	90	4	62	10	20	48	20	1.78
519038--519071	11	3.4	10	92	8	52	35	32	20	11	1.89
526176--526244	29	2.3	30	90	2	104	37	26	7	28	1.83
528032--528108	30	2.5	31	91	4	120	53	14	10	22	1.71
533131--533164	17	2.0	17	88	0	50	44	11	20	23	1.84
533682--533708	2	13.5	2	100	0	54	51	0	48	0	1.00
534936--534980	22	2.0	22	100	0	90	44	17	8	28	1.79
544565--544639	30	2.6	29	80	2	87	33	22	17	26	1.96
546344--546406	21	2.9	23	81	11	78	31	15	25	26	1.96
547328--547362	18	1.9	18	94	0	61	20	20	34	25	1.96
550554--550607	21	2.5	23	79	8	60	27	12	27	31	1.93
551146--551174	12	2.5	12	94	5	51	51	0	27	20	1.47
551516--551568	18	2.9	18	80	0	70	20	16	32	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
552466--552504	20	2.0	20	89	0	60	33	15	15	35	1.89
560318--560362	23	2.0	23	86	0	63	26	28	24	20	1.99
560341--560644	149	2.0	149	96	0	563	34	20	17	27	1.95
561628--561662	18	1.9	18	88	11	54	22	17	5	54	1.64
562244--562288	21	2.1	21	87	0	63	15	24	28	31	1.96
565348--565392	23	2.0	23	86	0	63	26	28	24	20	1.99
565371--565674	149	2.0	149	96	0	563	34	19	17	28	1.95
566660--566694	18	1.9	18	88	11	54	22	17	5	54	1.64
567276--567320	21	2.1	21	87	0	63	15	24	28	31	1.96
569218--569242	6	4.2	6	100	0	50	52	0	0	48	1.00
569244--569308	19	3.3	19	80	6	58	47	4	1	46	1.32
572119--572296	90	2.0	90	90	0	284	44	6	11	37	1.67
577205--577384	89	2.0	89	86	0	252	28	11	13	46	1.79
577682--577739	25	2.3	25	85	11	75	15	13	31	39	1.86
577865--577908	17	2.9	14	75	18	52	52	29	13	4	1.60
579438--579493	22	2.5	22	91	0	85	50	10	10	28	1.71
584541--584593	28	2.0	26	88	7	79	32	3	0	64	1.12
585018--585065	21	2.3	21	85	0	60	41	14	4	39	1.65
588733--588847	42	2.7	42	91	0	185	16	18	17	47	1.82
589037--589069	12	2.8	12	86	4	50	42	0	0	57	0.98
589049--589092	22	2.0	23	90	4	72	43	0	0	56	0.99
589534--589623	20	4.5	20	94	0	162	35	13	10	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
589606--589687	15	5.5	15	86	2	112	35	18	7	39	1.78
589606--589687	30	2.8	30	92	5	132	35	18	7	39	1.78
589606--589692	45	2.0	44	90	2	138	33	18	6	41	1.77
590278--590322	24	1.9	24	86	13	67	48	6	0	44	1.29
590341--590387	22	2.1	23	88	4	69	44	2	0	53	1.12
590467--590552	27	3.1	27	71	18	70	47	1	2	48	1.22
590707--590746	20	2.0	20	85	9	55	60	0	0	40	0.97
591516--591578	21	2.9	20	76	17	63	52	1	3	42	1.27
591555--591615	31	2.0	31	87	6	88	52	1	0	45	1.10
601078--601330	125	2.0	125	87	1	364	33	16	24	24	1.96
602505--602702	36	5.5	36	85	2	238	36	23	19	20	1.95
602505--602702	108	1.8	107	83	4	263	36	23	19	20	1.95
606710--606792	15	5.5	15	82	5	105	39	7	18	34	1.78
606725--606792	31	2.3	29	92	5	109	41	7	17	33	1.77
606706--606792	46	1.9	45	92	2	147	42	6	17	33	1.76
606775--606844	20	3.5	20	90	0	113	41	8	12	37	1.74
607011--607075	28	2.3	27	82	15	78	50	1	1	46	1.20
607011--607108	31	3.2	32	76	15	84	51	2	1	45	1.19
607128--607171	22	2.0	23	86	4	63	54	0	0	45	0.99
607132--607188	21	2.6	22	81	10	64	52	0	0	47	1.00
607068--607188	54	2.3	51	77	19	133	50	0	0	47	1.12
607378--607497	42	2.9	42	96	0	213	45	17	20	16	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
612087--612147	4	15.2	4	89	0	95	50	4	24	19	1.67
612164--612285	32	3.6	34	82	15	132	26	11	2	59	1.44
612988--613014	14	1.9	14	100	0	54	25	7	7	59	1.51
613310--613387	10	7.2	10	74	16	66	11	8	16	62	1.52
613310--613387	33	2.4	33	88	0	111	11	8	16	62	1.52
615101--615272	89	2.0	87	86	4	238	51	4	18	26	1.63
616536--616600	30	2.3	27	76	10	67	43	1	1	53	1.19
616765--616883	19	6.1	19	67	17	66	46	1	1	50	1.21
616771--616859	41	2.1	41	81	6	99	42	1	2	53	1.20
616815--616895	34	2.3	37	85	12	109	40	1	0	58	1.06

Tables:   1   2   3   4   5   6   7   8   9   10