genome.fa.s4862.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004862.1 Hibiscus syriacus cultivar Beakdansim tig00010968_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2846896

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1530 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2629804--2629851	13	3.7	13	77	0	51	27	20	20	31	1.98
2642741--2642849	37	2.9	38	77	14	102	45	9	3	41	1.53
2642820--2642859	22	2.0	21	85	14	57	47	15	0	37	1.45
2642879--2642907	2	14.5	2	100	0	58	48	0	0	51	1.00
2643202--2643269	32	2.2	31	81	7	75	27	14	19	38	1.91
2648178--2648211	16	2.1	16	89	10	52	35	0	8	55	1.31
2648336--2648424	31	2.8	32	85	11	105	46	1	1	51	1.15
2648326--2648419	31	3.2	28	81	14	93	45	1	1	52	1.15
2650261--2650312	25	2.0	27	88	7	81	36	3	3	55	1.36
2650259--2650319	26	2.2	28	83	13	83	40	3	3	52	1.34
2650501--2650540	14	2.7	15	84	3	55	17	30	2	50	1.59
2657867--2657928	24	2.6	24	97	0	115	27	24	16	32	1.96
2657919--2658279	178	2.0	181	96	2	674	33	18	17	30	1.94
2658404--2658519	60	1.9	60	84	10	157	53	14	7	24	1.67
2662381--2662427	23	1.9	25	83	12	62	63	6	12	17	1.48
2663440--2663473	8	3.8	9	85	14	52	0	14	0	85	0.60
2667256--2667302	23	2.0	23	91	0	76	36	25	21	17	1.94
2667262--2667335	23	3.2	23	74	0	76	35	20	27	17	1.95
2669259--2669401	73	2.0	73	100	0	286	32	22	18	27	1.97
2670456--2670529	36	2.1	36	100	0	148	27	18	16	37	1.92
2676987--2677024	11	3.3	11	86	13	58	71	2	7	18	1.23
2677796--2677836	21	1.9	22	85	5	57	36	12	19	31	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2683128--2683167	20	2.0	21	95	5	73	37	20	20	22	1.94
2686760--2686823	17	3.6	17	79	6	65	34	14	9	42	1.77
2687235--2687283	24	2.0	24	84	0	62	34	14	12	38	1.83
2696305--2696423	46	2.6	46	87	1	166	20	21	10	47	1.81
2696318--2696392	20	3.5	20	70	19	69	20	26	9	44	1.81
2696337--2696495	73	2.2	72	85	1	210	20	21	11	46	1.82
2696337--2696495	26	6.5	26	69	17	126	20	21	11	46	1.82
2696437--2696515	20	3.7	20	73	18	68	21	24	8	45	1.80
2696411--2696521	46	2.4	46	89	0	177	22	21	9	46	1.79
2710834--2710913	39	2.1	39	92	0	133	33	15	23	27	1.94
2722980--2723013	16	2.1	16	100	0	68	35	17	0	47	1.48
2724250--2724301	2	26.0	2	100	0	104	50	0	0	50	1.00
2728488--2728514	13	2.1	13	100	0	54	22	7	25	44	1.79
2734845--2734869	13	1.9	13	100	0	50	0	0	12	88	0.53
2740619--2741011	46	8.5	46	89	0	563	21	22	16	38	1.92
2746213--2746258	8	5.6	8	80	14	58	39	0	2	58	1.10
2746230--2746258	11	2.7	11	94	5	51	37	0	0	62	0.96
2747872--2747913	20	2.1	20	100	0	84	38	7	28	26	1.82
2747880--2747923	20	2.2	20	84	8	54	45	4	27	22	1.72
2749241--2749279	19	2.1	19	85	9	53	35	25	10	28	1.89
2749656--2749941	143	2.0	143	93	1	493	40	12	12	34	1.80
2751907--2751957	23	2.2	23	92	0	84	27	3	7	60	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2752103--2752151	15	3.2	16	75	13	50	51	10	8	30	1.65
2752820--2752871	24	2.2	23	89	3	77	32	23	25	19	1.97
2752854--2752965	23	4.8	23	76	12	95	37	23	22	16	1.94
2752875--2752965	24	3.9	23	78	4	92	37	23	20	18	1.94
2757850--2757910	20	2.9	21	87	7	79	18	26	34	21	1.96
2766679--2766843	80	2.1	79	92	5	271	29	25	13	30	1.94
2767427--2767712	147	1.9	147	97	0	545	30	24	16	29	1.96
2769450--2769501	24	2.2	24	86	3	70	38	17	23	21	1.93
2769493--2769595	24	4.4	24	76	3	102	33	22	23	20	1.97
2769495--2769595	47	2.1	47	85	7	134	33	21	23	20	1.97
2778729--2778757	2	14.5	2	100	0	58	48	0	0	51	1.00
2779622--2779646	7	3.6	7	100	0	50	16	56	12	16	1.68
2780118--2780142	6	4.2	6	100	0	50	16	0	0	84	0.63
2783964--2784053	20	4.6	20	90	1	119	31	20	13	35	1.91
2785183--2785221	2	19.5	2	100	0	78	48	0	51	0	1.00
2789109--2789133	12	2.1	12	100	0	50	0	44	0	56	0.99
2790900--2790942	15	2.9	14	86	13	59	48	0	2	48	1.14
2790900--2790931	16	2.1	16	94	5	57	43	0	0	56	0.99
2793044--2793829	419	1.9	412	87	5	1150	43	7	8	39	1.65
2793650--2794088	179	2.5	177	76	7	422	38	10	9	41	1.72
2798795--2798856	31	2.0	30	81	3	70	29	6	0	64	1.18
2799138--2799383	118	2.1	118	86	4	336	39	15	16	29	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2801351--2801998	183	3.5	183	91	0	1064	28	16	14	41	1.86
2801461--2802342	183	5.1	165	78	14	760	28	15	13	42	1.85
2801705--2802344	345	1.9	342	91	2	918	27	15	14	42	1.86
2801990--2802344	182	1.9	183	89	2	545	28	14	13	43	1.83
2810392--2810507	3	38.7	3	89	0	178	62	0	3	34	1.12
2810759--2811411	113	5.8	113	95	0	1024	28	20	13	37	1.90
2812032--2812460	82	5.2	82	91	2	680	35	20	13	29	1.92
2812034--2812460	166	2.6	165	92	1	723	35	20	13	29	1.91
2813589--2813663	6	10.7	7	74	17	59	2	16	0	81	0.80
2813590--2813665	12	6.5	11	79	11	73	2	15	0	81	0.80
2813606--2813654	25	1.9	26	88	12	75	4	14	0	81	0.83
2813589--2813670	19	4.5	19	73	11	73	2	17	0	80	0.82
2813641--2813670	9	3.2	9	90	9	51	0	20	0	80	0.72
2825100--2825126	13	2.1	13	100	0	54	70	0	0	29	0.88
2826297--2826385	3	29.7	3	86	0	124	60	0	4	34	1.17
2826288--2826386	15	6.6	16	83	4	102	58	0	4	37	1.17
2827578--2827605	13	2.2	13	100	0	56	21	14	7	57	1.61
2829355--2829410	17	3.4	17	82	9	71	3	10	14	71	1.26
2829355--2829401	16	2.9	16	93	3	76	4	10	17	68	1.35
2830002--2830359	42	8.4	42	88	0	491	32	19	20	26	1.97
2832984--2833022	2	19.5	2	100	0	78	48	0	0	51	1.00
2833333--2833683	41	8.4	41	75	11	247	31	17	19	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2843571--2843631	31	2.0	32	87	12	92	26	4	27	40	1.76
2846023--2846061	20	2.0	20	85	5	53	43	25	0	30	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!