genome.fa.s4862.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004862.1 Hibiscus syriacus cultivar Beakdansim tig00010968_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2846896

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  1  of  13  ( 1530 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62--214	46	3.4	45	86	4	211	21	23	13	41	1.88
90--234	20	6.7	20	72	18	85	21	25	13	40	1.89
85--323	111	2.2	109	84	6	320	21	24	12	41	1.88
131--271	65	2.2	65	83	7	178	21	24	12	41	1.88
203--337	44	3.0	44	86	5	182	22	22	13	41	1.88
3040--3487	55	8.2	55	83	2	546	29	17	16	36	1.92
3068--3493	109	3.9	109	87	1	561	29	16	16	37	1.91
4673--4746	30	2.4	31	88	8	107	27	16	2	54	1.56
8740--8840	45	2.2	45	89	3	150	21	19	13	44	1.86
9212--9412	95	2.1	96	85	2	262	24	21	12	40	1.89
12609--12957	55	6.3	55	82	2	369	28	16	17	36	1.92
12609--12957	110	3.2	109	84	2	412	28	16	17	36	1.92
12609--12957	165	2.1	165	83	1	430	28	16	17	36	1.92
15035--15089	20	2.7	21	82	5	67	27	25	20	27	1.99
16106--16143	20	1.9	20	88	0	58	21	26	18	34	1.96
18026--18140	20	5.7	20	80	6	124	33	26	16	23	1.96
18027--18175	20	7.4	20	78	6	122	34	25	15	24	1.95
23979--24069	20	4.5	20	75	8	85	31	20	16	30	1.95
23980--24094	61	1.9	61	83	0	149	32	20	15	31	1.94
25928--25965	20	1.9	20	89	10	60	39	15	5	39	1.70
30790--31246	81	5.6	81	84	3	542	27	23	12	36	1.90
30790--31216	163	2.6	162	83	5	547	28	23	11	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31196--31789	68	8.7	68	86	0	794	29	23	15	31	1.95
36760--37164	81	5.0	80	87	1	549	28	24	10	36	1.89
37121--37710	68	8.7	68	82	3	636	30	23	14	32	1.94
38388--38445	22	2.6	22	97	0	107	31	13	17	37	1.89
50069--50106	15	2.5	15	100	0	76	23	10	13	52	1.71
54375--54401	14	1.9	14	100	0	54	18	22	29	29	1.97
57094--57164	18	3.8	18	83	7	97	7	15	8	69	1.36
57080--57176	38	2.6	38	94	0	167	8	15	9	67	1.42
57080--57176	20	5.1	20	80	9	121	8	15	9	67	1.42
59830--59862	15	2.2	15	94	0	57	45	0	0	54	0.99
60266--60349	28	3.0	28	82	3	96	36	14	13	35	1.85
60266--60351	29	3.0	29	84	1	102	37	13	12	36	1.84
61887--61977	20	4.6	20	74	10	71	38	26	12	23	1.89
62136--62190	22	2.5	22	96	0	101	25	43	7	23	1.79
62136--62204	22	3.1	22	91	0	93	24	42	11	21	1.86
62543--62581	20	2.0	20	94	0	69	51	17	12	17	1.76
62562--62595	14	2.4	14	90	0	50	47	23	17	11	1.81
62547--62611	34	1.9	34	87	6	96	47	21	16	13	1.82
64587--64705	21	5.7	21	76	4	105	22	35	17	24	1.95
64587--64705	42	2.8	43	87	5	163	22	35	17	24	1.95
69572--69609	16	2.5	15	84	12	51	65	0	5	28	1.14
69838--69935	41	2.4	41	82	3	117	30	12	25	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69871--69959	20	4.4	20	80	8	108	25	13	29	31	1.94
69867--69959	41	2.3	40	85	5	116	25	12	29	32	1.93
71550--71602	23	2.3	23	86	0	70	50	13	22	13	1.75
77255--77318	21	3.0	21	86	4	92	28	23	25	23	2.00
77584--77612	14	2.0	15	93	6	51	13	13	13	58	1.63
83097--83157	21	3.0	19	81	13	68	26	21	26	26	1.99
83422--83450	14	2.0	15	93	6	51	13	13	13	58	1.63
84435--84464	12	2.5	12	100	0	60	33	26	6	33	1.83
88900--88963	22	3.0	21	84	4	83	28	23	23	25	2.00
89236--89264	14	2.0	15	93	6	51	13	13	13	58	1.63
90294--90323	12	2.5	12	100	0	60	33	26	6	33	1.83
94918--94981	22	3.0	21	84	4	83	28	23	23	25	2.00
95252--95280	14	2.0	15	93	6	51	13	13	13	58	1.63
96310--96339	12	2.5	12	100	0	60	33	26	6	33	1.83
101166--101236	15	4.7	15	75	16	67	43	0	1	54	1.08
101159--101236	17	4.7	17	75	15	74	46	0	1	52	1.08
101165--101237	3	25.3	3	73	8	53	42	0	1	56	1.08
101164--101233	23	3.1	23	79	2	79	44	0	1	54	1.09
104663--104718	21	2.6	21	88	2	85	44	21	17	16	1.86
110386--110486	37	2.8	36	88	7	141	40	21	17	19	1.91
111590--111619	13	2.2	14	94	5	53	40	0	13	46	1.43
111908--111953	17	2.9	15	78	15	56	54	28	4	13	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111918--111951	17	2.0	17	94	0	59	50	29	5	14	1.67
113210--113247	12	3.2	12	96	0	67	21	0	52	26	1.47
113952--114013	23	2.7	23	100	0	124	19	25	33	20	1.96
117340--117379	21	1.9	21	85	10	55	35	10	2	52	1.48
120298--120404	42	2.6	41	78	1	115	27	23	20	28	1.99
119671--132071	214	58.3	213	88	3	17992	33	14	18	32	1.92
120941--121042	42	2.5	42	78	10	113	25	24	19	30	1.98
121583--121651	20	3.3	20	67	15	59	30	23	17	28	1.97
121583--121684	42	2.5	41	85	3	141	29	22	18	29	1.97
119671--132071	425	29.2	426	88	3	17933	33	14	18	32	1.92
125834--125935	42	2.5	41	79	3	105	26	20	22	30	1.98
126263--126369	42	2.6	42	81	1	135	26	22	21	29	1.99
127118--127219	42	2.5	41	82	3	123	28	21	19	30	1.98
127336--127432	42	2.3	42	82	1	115	24	19	22	32	1.97
130307--130413	42	2.6	41	78	1	115	27	23	20	28	1.99
130726--130819	38	2.4	38	76	5	98	25	21	24	28	1.99
131138--131253	42	2.8	40	76	12	117	26	22	20	30	1.98
131894--132252	181	2.0	180	91	1	585	36	13	16	33	1.87
132166--132272	42	2.6	42	79	4	119	26	21	22	29	1.99
132074--150023	214	84.0	214	87	4	24688	33	15	18	32	1.92
132380--132481	42	2.5	42	80	7	120	25	22	20	31	1.98
133220--133321	42	2.5	41	77	6	107	26	20	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134274--134375	42	2.6	38	81	6	105	23	21	25	29	1.99
119671--150674	427	72.7	427	86	4	42144	33	15	18	32	1.92
135353--135454	42	2.5	42	80	7	120	25	22	20	31	1.98
136204--136310	42	2.6	41	82	2	133	29	21	19	28	1.98
136624--136730	42	2.6	42	80	1	117	26	19	24	29	1.98
137694--137795	42	2.5	42	80	7	120	25	22	20	31	1.98
138338--138450	42	2.7	41	79	2	118	28	22	20	29	1.98
138550--138653	42	2.5	41	79	3	118	25	23	22	29	1.99
140688--140794	42	2.6	41	80	4	117	25	20	24	29	1.99
142818--142924	42	2.6	41	79	7	117	25	19	24	30	1.98
143244--143358	42	2.8	39	74	12	113	28	21	20	29	1.98
144303--144404	42	2.5	42	80	7	120	25	21	21	31	1.98
145355--145452	42	2.4	41	80	1	115	24	22	23	29	1.99
146060--146140	40	2.0	42	82	4	103	28	19	19	32	1.97
146265--146365	41	2.5	42	78	3	116	25	23	20	29	1.99
147332--147438	42	2.6	41	80	4	117	25	20	24	29	1.99
148829--148935	42	2.6	41	80	1	124	25	22	22	29	1.99
149043--149144	42	2.5	42	80	7	120	25	21	21	31	1.98
149893--149994	42	2.5	42	80	7	120	25	22	20	31	1.98
150043--150674	214	2.9	215	91	2	1031	33	14	19	32	1.92
150573--150757	42	4.5	42	77	4	196	27	21	21	30	1.98
150573--150762	83	2.3	83	92	0	317	27	21	20	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151277--151342	14	4.4	15	80	12	73	40	0	1	57	1.08
151270--151335	17	4.0	17	80	11	75	45	0	1	53	1.09
151276--151342	3	23.3	3	77	8	59	40	0	1	58	1.07
151275--151342	23	3.0	22	78	6	73	41	0	1	57	1.08
155973--156025	17	3.1	17	77	0	61	37	9	5	47	1.60
163008--163043	19	1.9	19	94	5	65	63	22	0	13	1.29
165379--165426	18	2.7	18	90	6	62	50	10	6	33	1.62
165458--165514	17	3.4	17	80	0	60	40	17	12	29	1.86
172406--172443	16	2.4	16	100	0	76	13	7	57	21	1.60
188395--188432	20	1.9	20	94	0	67	31	34	15	18	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13