genome.fa.s4862.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01004862.1 Hibiscus syriacus cultivar Beakdansim tig00010968_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2846896

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  2  of  13  ( 1530 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
188460--188501	19	2.3	19	84	8	52	33	28	14	23	1.94
190643--190857	47	4.6	47	93	0	367	38	6	20	34	1.78
195417--195632	47	4.6	47	91	1	342	37	7	20	34	1.81
195417--195632	95	2.3	94	92	0	360	37	7	20	34	1.81
197123--197230	46	2.4	46	84	1	137	48	10	21	20	1.79
197150--197302	71	2.1	72	92	1	254	47	11	19	21	1.81
197194--197337	26	6.0	25	74	19	146	43	11	22	23	1.85
197245--197323	20	3.7	20	76	18	86	41	10	26	21	1.85
197219--197345	46	2.8	46	91	1	202	43	10	22	24	1.84
197122--197337	117	1.8	118	89	1	344	45	10	21	22	1.82
203613--203879	20	11.9	20	68	22	140	42	11	23	22	1.86
203632--203946	26	13.6	25	67	22	170	42	11	21	24	1.85
203606--203987	183	2.1	184	88	1	563	43	10	20	25	1.84
203606--203979	46	8.2	46	89	0	543	43	10	21	24	1.84
207110--207185	40	1.9	40	83	5	100	32	17	25	25	1.96
207125--207194	20	3.5	20	84	0	95	31	15	25	27	1.96
207157--207199	20	2.2	20	95	0	77	32	16	25	25	1.96
214828--214917	32	3.0	31	75	13	89	33	12	10	44	1.75
219838--219894	27	2.1	27	84	9	73	70	0	3	26	1.03
219824--219885	5	12.0	5	74	6	52	72	1	3	22	1.08
219850--219905	27	2.2	25	84	12	69	71	0	1	26	0.96
219847--219904	26	2.3	24	80	11	71	70	0	1	27	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
220074--220111	2	19.5	2	89	5	60	52	0	2	44	1.14
221782--221892	3	35.7	3	78	10	107	61	5	0	32	1.25
221782--221892	13	8.8	13	78	10	92	61	5	0	32	1.25
221782--221892	16	7.1	15	79	6	107	61	5	0	32	1.25
221808--221880	22	3.5	22	77	11	98	63	8	0	28	1.23
221794--221892	41	2.5	41	95	3	175	61	6	0	32	1.20
229521--229574	27	2.0	27	100	0	108	33	22	7	37	1.82
237795--237852	19	3.0	20	76	19	59	51	15	31	1	1.53
237811--237850	16	2.4	16	87	8	53	50	15	32	2	1.57
239437--239506	33	2.1	33	81	5	79	15	32	18	32	1.93
249551--249576	5	5.2	5	100	0	52	23	57	19	0	1.40
250069--250103	2	17.5	2	100	0	70	51	0	0	48	1.00
251857--251908	3	18.0	3	86	7	72	65	1	0	32	1.04
251844--251908	22	2.9	22	80	11	62	64	4	3	27	1.28
252236--252342	42	2.6	41	76	5	117	30	20	22	26	1.98
252063--253352	233	5.6	232	86	4	1666	33	16	16	33	1.91
252521--253352	220	3.7	222	86	5	1019	33	15	16	34	1.91
264365--264593	44	5.2	43	81	2	244	41	10	22	25	1.85
271171--271434	44	5.9	43	78	7	237	39	10	22	27	1.87
271171--271397	88	2.6	87	82	4	278	40	11	22	26	1.87
273174--273207	14	2.4	14	95	0	59	32	11	29	26	1.92
273370--273523	44	3.5	44	86	2	220	41	12	22	23	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
276572--276639	23	3.0	23	84	0	82	25	20	22	32	1.98
280215--280248	16	2.1	17	88	5	52	41	17	2	38	1.65
289783--289908	47	2.8	46	84	7	152	29	22	7	40	1.82
292416--292472	23	2.6	22	88	5	80	33	22	28	15	1.95
293368--293410	15	2.9	15	89	0	68	27	27	20	23	1.99
293462--293506	20	2.2	20	88	0	72	40	8	13	37	1.76
297201--297250	22	2.3	22	82	3	66	28	18	24	30	1.97
297211--297273	22	2.9	22	79	15	60	31	17	22	28	1.96
299366--299398	15	2.1	16	94	5	59	45	3	0	51	1.16
299496--300011	263	2.0	262	90	5	810	36	8	4	50	1.53
303191--303232	16	2.6	16	100	0	84	33	11	14	40	1.82
309772--309828	21	2.7	21	91	0	96	21	29	33	15	1.94
310477--310516	17	2.5	15	84	11	53	45	0	0	55	0.99
311408--311445	16	2.4	16	95	0	67	23	31	31	13	1.93
311966--312035	24	2.9	24	93	0	113	44	7	18	30	1.76
316471--316502	2	16.0	2	100	0	64	50	0	0	50	1.00
319066--319134	2	34.5	2	100	0	138	50	0	0	49	1.00
319351--319382	2	16.0	2	100	0	64	50	0	0	50	1.00
321488--321524	4	9.8	4	85	11	51	51	18	0	29	1.47
321492--321530	18	2.2	18	100	0	78	51	15	0	33	1.44
322718--322787	2	35.0	2	100	0	140	50	0	50	0	1.00
333823--333918	23	4.1	24	76	10	101	32	23	20	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
334596--334645	20	2.5	21	80	9	59	32	24	10	34	1.88
338533--338586	26	2.1	26	96	0	99	48	14	7	29	1.71
347755--347976	54	4.1	54	88	0	336	29	15	18	36	1.92
354496--354549	24	2.2	24	87	6	74	42	11	20	25	1.85
360450--360499	26	1.9	26	84	8	66	36	26	10	28	1.88
364975--365140	85	2.0	85	92	0	278	30	16	21	30	1.96
365119--365166	13	3.7	13	94	0	87	33	18	20	27	1.96
365112--365166	26	2.1	26	89	0	83	36	16	20	27	1.93
365437--365653	53	4.1	53	84	9	300	28	16	18	37	1.92
365443--365648	52	3.9	51	86	6	279	28	15	18	38	1.91
365443--365642	105	1.9	105	90	4	323	28	15	18	38	1.91
370082--370126	17	2.6	18	78	7	56	35	0	0	64	0.94
374150--374245	47	2.1	43	83	11	113	46	10	5	37	1.60
374239--374285	2	24.0	2	95	4	87	51	0	0	48	1.00
378895--378963	17	4.2	17	78	17	83	18	44	23	13	1.84
378917--378953	13	2.8	13	100	0	74	16	48	24	10	1.77
378971--379049	29	2.8	29	94	1	133	22	8	22	45	1.80
386146--386214	17	4.2	17	78	17	83	18	44	23	13	1.84
386168--386204	13	2.8	13	100	0	74	16	48	24	10	1.77
386222--386300	29	2.8	29	94	1	133	24	8	21	45	1.80
387834--387888	21	2.6	21	97	0	101	23	21	25	29	1.99
388342--388375	9	3.6	10	88	11	54	29	0	17	52	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389601--389667	23	2.9	23	81	0	80	23	25	20	29	1.99
390492--390559	32	2.1	32	94	0	118	25	11	26	36	1.90
390579--390682	43	2.4	43	85	3	138	26	23	16	33	1.95
392366--392405	21	1.9	21	100	0	80	35	30	20	15	1.93
395128--395163	2	18.0	2	94	0	63	52	0	0	47	1.00
395354--395410	27	2.1	27	86	3	78	71	0	1	26	0.95
395533--395621	42	2.0	45	80	6	103	59	1	6	32	1.31
395654--395691	17	2.4	16	86	8	51	65	2	5	26	1.27
396049--396153	37	2.8	37	85	0	138	29	14	14	41	1.85
396696--397143	105	4.3	105	88	4	631	22	18	25	33	1.97
397263--397338	36	2.1	36	90	0	116	40	15	21	22	1.90
397238--397556	105	3.1	104	92	2	509	36	11	20	31	1.89
397458--397623	90	1.9	89	92	3	280	38	12	21	28	1.89
397672--397785	36	3.2	36	70	2	104	44	14	15	25	1.84
397627--397794	72	2.3	75	83	9	204	41	13	17	27	1.87
398795--399148	183	1.9	183	94	1	629	30	21	20	27	1.98
402020--402052	15	2.2	15	89	10	50	78	12	0	9	0.95
406596--406628	14	2.4	14	94	0	57	30	30	6	33	1.82
410541--410596	26	2.2	26	93	0	94	41	5	39	14	1.68
414585--414614	6	5.0	6	100	0	60	66	0	0	33	0.92
414725--414789	22	3.0	22	76	13	62	70	0	4	24	1.06
415930--416167	5	48.8	5	69	22	134	55	3	1	39	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415911--416084	21	8.6	20	70	23	93	57	4	1	36	1.27
415926--416166	19	12.8	19	73	17	159	55	3	1	39	1.28
416020--416166	2	77.5	2	69	22	86	53	2	2	41	1.26
416035--416166	34	3.9	32	77	17	117	52	3	2	42	1.29
417128--417172	22	2.0	22	86	8	63	15	15	13	55	1.69
424732--424777	23	2.0	23	100	0	92	43	26	8	21	1.81
428494--428532	21	1.9	20	89	5	60	35	23	15	25	1.94
441548--441591	19	2.3	19	92	0	70	61	15	15	6	1.54
443292--443330	19	2.1	19	90	0	60	61	7	0	30	1.24
445639--445682	23	2.0	22	81	4	52	70	0	2	27	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13