genome.fa.s5203.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005203.1 Hibiscus syriacus cultivar Beakdansim tig00011761_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1490345

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 934 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
323857--323894	20	1.9	20	94	0	67	31	34	15	18	1.92
323912--324003	45	2.0	46	93	2	159	30	25	18	26	1.98
325879--325905	14	1.9	14	100	0	54	40	22	22	14	1.90
328232--328365	71	1.9	71	88	0	205	32	14	21	30	1.94
328231--328371	35	4.0	35	74	10	126	32	15	20	31	1.94
332855--332896	2	21.0	2	100	0	84	50	0	0	50	1.00
333468--333539	25	2.9	25	81	8	94	43	5	0	51	1.25
333468--333556	24	3.5	26	80	11	96	42	4	0	52	1.21
333539--333583	24	1.9	23	90	4	72	37	2	0	60	1.09
333713--333779	31	2.2	31	91	0	107	50	11	5	31	1.63
337356--337400	21	2.1	21	87	0	63	31	28	24	15	1.96
338867--339181	149	2.1	149	95	1	569	27	16	21	34	1.95
339149--339193	23	2.0	23	90	0	72	22	26	26	24	2.00
347000--347036	13	2.8	13	95	0	65	40	27	13	18	1.88
348948--349102	64	2.4	64	82	2	177	34	16	20	29	1.94
351231--351268	12	3.0	13	84	7	60	47	5	13	34	1.65
351303--351340	18	2.2	16	90	9	58	63	15	0	21	1.31
351746--351863	44	2.7	44	83	6	168	27	18	22	31	1.97
354183--354224	21	2.0	21	95	0	75	26	28	21	23	1.99
354300--354359	29	2.0	31	90	6	97	41	16	6	35	1.75
356352--356391	20	2.0	21	85	5	55	25	17	10	47	1.78
368089--368138	26	1.9	25	80	8	55	50	4	0	46	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372545--372578	14	2.4	14	100	0	68	58	14	14	11	1.63
372545--372589	14	3.2	14	90	0	54	55	15	15	13	1.69
373559--373594	17	2.1	17	94	0	63	50	13	0	36	1.43
389930--389958	8	3.8	8	95	4	51	72	0	13	13	1.13
393811--393844	15	2.3	15	100	0	68	23	20	14	41	1.89
397592--397634	20	2.2	20	86	0	59	32	18	13	34	1.90
400009--400120	21	5.4	21	88	4	138	22	14	27	35	1.93
400035--400113	40	2.0	40	92	0	131	21	17	29	31	1.96
400011--400127	61	1.9	61	85	1	162	23	14	27	35	1.93
401619--401667	14	3.3	15	80	8	55	36	4	2	57	1.30
401750--401814	30	2.1	31	88	2	96	43	10	6	40	1.65
403883--403921	20	2.0	19	95	5	69	25	17	35	20	1.95
415628--415690	30	2.1	31	84	3	83	36	26	9	26	1.87
422333--422390	24	2.5	24	86	8	75	32	15	20	31	1.94
422348--422420	22	3.2	23	86	3	85	31	20	23	24	1.98
422386--422457	25	3.0	25	84	6	96	30	22	23	23	1.99
422599--422636	15	2.5	15	95	0	67	50	26	0	23	1.50
436541--436593	21	2.5	21	87	0	70	30	35	13	20	1.91
438599--438637	15	2.6	15	91	0	60	17	15	12	53	1.72
439971--440025	20	2.8	20	84	13	69	32	16	23	27	1.96
440545--441031	55	8.9	55	88	3	687	33	18	17	30	1.94
440562--440704	27	5.2	27	61	24	66	34	20	16	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
440546--441031	165	3.0	164	91	2	769	33	18	17	30	1.94
449798--450008	64	3.2	65	77	9	189	30	23	18	26	1.98
449980--450028	19	2.6	19	84	9	57	24	28	20	26	1.99
450767--450792	13	2.0	13	100	0	52	7	0	7	84	0.77
451969--452016	20	2.3	21	82	10	55	47	2	0	50	1.12
453322--453377	8	6.6	8	79	18	53	58	1	0	39	1.08
453326--453373	2	26.5	2	78	19	52	56	2	0	41	1.11
453326--453377	14	3.6	14	85	12	70	57	1	0	40	1.10
454817--454860	19	2.2	20	88	4	63	45	0	2	52	1.13
456820--456865	15	3.0	15	87	6	74	69	0	0	30	0.89
459166--459224	23	2.6	22	84	7	73	38	0	1	59	1.08
460294--460338	19	2.2	19	84	11	54	62	6	0	31	1.21
461482--461518	19	1.9	19	94	0	65	29	29	16	24	1.96
463134--463175	22	2.0	22	85	4	59	19	0	9	71	1.13
469831--470626	55	14.7	55	83	7	489	26	26	15	30	1.96
470117--470614	54	9.2	54	84	4	614	25	26	17	30	1.97
470102--470614	109	4.8	107	83	6	601	25	26	17	30	1.97
470102--470614	163	3.2	163	86	4	684	25	26	17	30	1.97
470997--471194	36	5.5	36	86	2	238	20	19	23	36	1.95
475954--476090	21	6.6	21	82	9	83	16	20	22	40	1.91
475972--476090	21	5.7	21	83	7	118	17	21	21	39	1.92
475989--476090	42	2.4	42	87	6	152	18	21	21	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480813--480863	24	2.2	23	79	6	57	13	13	15	56	1.67
482028--482058	14	2.2	14	94	0	53	22	0	38	38	1.54
482068--482099	14	2.3	14	94	0	55	31	0	21	46	1.52
483494--483519	2	13.0	2	100	0	52	50	0	0	50	1.00
483618--483686	17	3.8	17	74	20	59	78	1	4	15	0.98
483621--483677	5	10.8	5	79	7	60	78	0	5	15	0.91
483617--483677	31	2.0	31	87	12	90	78	0	6	14	0.94
483542--483676	72	1.9	72	80	9	159	72	2	8	15	1.21
484959--485245	38	7.5	38	76	10	214	46	5	2	45	1.39
485293--485343	25	2.0	25	88	0	75	58	3	1	35	1.28
485836--485887	2	27.0	2	85	14	74	48	0	1	50	1.12
486468--486537	21	3.4	19	70	16	50	54	7	0	38	1.28
486839--486873	2	17.5	2	100	0	70	48	0	0	51	1.00
489059--489122	22	2.9	22	100	0	128	26	23	23	26	2.00
491084--491156	32	2.3	32	85	0	92	35	21	12	30	1.90
492317--492388	20	3.5	20	71	1	63	31	26	16	25	1.96
500003--500046	23	1.9	23	81	9	54	45	6	9	38	1.63
505215--505248	16	2.1	17	88	5	52	41	17	2	38	1.65
509258--509295	19	2.1	19	85	5	51	36	21	0	42	1.53
509484--509517	16	2.1	17	88	5	52	41	17	2	38	1.65
509952--509981	15	1.9	16	93	6	53	20	20	6	53	1.67
511334--511489	65	2.4	65	85	5	192	26	17	24	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
511334--511539	65	3.2	63	78	13	190	25	17	24	31	1.97
512006--512050	2	22.5	2	100	0	90	51	0	0	48	1.00
512185--512233	2	25.0	2	95	4	91	51	0	0	48	1.00
518095--518134	21	1.9	21	85	10	55	35	10	2	52	1.48
520039--520243	65	3.2	62	78	12	202	26	18	24	30	1.98
524906--524950	18	2.5	18	85	0	63	31	13	2	53	1.52
525754--525799	23	2.0	24	86	4	67	26	26	30	17	1.97
525874--525927	21	2.5	20	74	11	54	38	25	12	22	1.90
530742--530790	23	2.1	24	88	3	73	38	26	20	14	1.91
531545--531606	24	2.6	24	89	0	97	29	19	14	37	1.91
540906--541732	345	2.5	340	89	4	1256	44	5	6	43	1.52
541724--541778	26	2.1	27	83	10	69	49	1	1	47	1.23
545262--545293	15	2.1	16	94	5	57	65	0	0	34	0.93
547298--547362	18	3.4	18	72	12	58	47	16	7	27	1.74
547286--547360	39	1.9	39	97	0	141	48	18	8	25	1.75
547390--547449	13	4.7	13	79	4	68	23	25	0	51	1.48
555187--555254	21	3.1	22	81	10	77	32	29	22	16	1.95
555225--555270	23	2.0	23	86	0	65	36	26	21	15	1.93
559213--559260	18	2.7	18	83	0	60	35	20	2	41	1.64
559463--559544	43	1.9	42	82	7	103	37	24	20	17	1.93
559471--559555	23	3.9	23	78	10	79	38	24	17	18	1.92
570186--570244	30	1.9	31	83	10	77	57	3	1	37	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
571509--571760	40	6.3	40	73	12	162	40	24	15	19	1.90
571535--571765	20	11.6	19	77	9	196	40	24	15	19	1.90
571549--571760	81	2.7	80	84	4	277	40	24	15	20	1.90
571535--571766	60	3.9	59	82	5	297	40	24	15	18	1.90
571882--571925	22	2.0	22	95	0	79	20	40	15	22	1.90
572331--572377	19	2.5	19	93	6	78	10	19	23	46	1.80
572359--572405	14	3.4	14	76	2	51	8	17	23	51	1.72
572392--572431	20	2.0	20	85	0	53	15	12	22	50	1.77
574395--574436	12	3.5	12	83	0	57	28	2	2	66	1.16
574586--574636	21	2.4	21	83	6	59	23	27	25	23	2.00

Tables:   1   2   3   4   5   6   7   8