genome.fa.s5203.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005203.1 Hibiscus syriacus cultivar Beakdansim tig00011761_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1490345

Tables:   1   2   3   4   5   6   7   8   

This is table  4  of  8  ( 934 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
575980--576146	64	2.6	65	85	9	193	29	1	15	53	1.52
576204--576284	20	4.1	20	85	4	103	45	16	20	17	1.85
576668--576708	21	2.0	21	90	0	64	17	26	17	39	1.91
576669--576715	21	2.2	21	84	0	58	21	25	19	34	1.96
576934--576995	18	3.0	22	72	18	69	25	37	16	20	1.93
577331--577420	20	4.6	20	84	1	92	15	16	22	45	1.85
577385--577428	20	2.2	20	87	0	61	13	13	20	52	1.74
579304--579409	20	5.6	20	77	13	107	39	19	19	20	1.93
579307--579428	34	3.4	34	77	12	127	41	18	20	18	1.90
579454--579607	20	8.4	20	75	18	111	16	19	22	42	1.89
579435--579587	34	4.4	34	73	11	128	15	20	21	41	1.89
579559--579617	20	3.0	20	89	0	64	16	18	22	42	1.89
580093--580134	21	2.2	19	87	12	59	21	35	19	23	1.96
580091--580187	21	4.7	20	67	11	52	22	35	17	24	1.95
580098--580179	42	2.0	42	85	4	112	21	39	15	23	1.92
581556--581591	14	2.6	14	90	0	54	30	0	22	47	1.52
581704--581788	33	2.5	33	90	1	125	43	17	23	15	1.87
581726--581794	19	3.8	19	73	21	76	44	18	21	14	1.85
581795--581823	14	2.1	14	100	0	58	6	27	20	44	1.77
581815--581908	20	4.7	20	88	2	136	17	21	25	36	1.94
584328--584381	24	2.2	24	90	0	81	42	20	16	20	1.89
585249--585355	20	5.3	20	88	3	162	23	20	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
585249--585377	41	3.2	40	84	4	170	26	19	20	34	1.96
585263--585396	61	2.2	60	82	6	162	26	20	21	31	1.98
586215--586248	12	2.8	12	90	0	50	14	0	29	55	1.40
586912--587023	20	5.7	20	80	8	104	31	14	20	33	1.92
586988--587043	20	2.8	20	86	5	69	23	16	25	35	1.94
587050--587097	20	2.4	20	85	0	60	29	12	25	33	1.92
587063--587100	20	1.9	20	94	0	67	21	13	26	39	1.89
587279--587304	13	2.0	13	100	0	52	46	38	0	15	1.46
587326--587479	73	2.1	72	88	5	231	55	0	12	30	1.42
587604--587633	2	14.5	2	93	6	51	46	3	0	50	1.18
589011--589064	24	2.2	24	78	15	58	11	1	7	79	1.00
589095--589145	22	2.3	22	75	15	52	13	9	3	72	1.24
594393--595239	84	10.3	83	79	5	804	31	24	19	25	1.98
594363--595231	247	3.5	248	87	3	1173	31	23	19	25	1.98
597171--597195	2	12.5	2	100	0	50	48	0	0	52	1.00
597417--597460	6	6.6	7	92	7	58	29	0	0	70	0.88
597426--597460	6	5.7	6	93	6	61	28	0	0	71	0.86
597418--597460	12	3.3	13	90	9	70	30	0	0	69	0.88
597929--597986	26	2.2	25	82	14	73	37	6	0	55	1.27
598069--598297	80	2.9	80	91	0	377	33	11	12	42	1.79
598078--598325	80	3.1	80	85	6	315	31	11	13	43	1.80
599293--599370	30	2.6	29	78	8	84	43	14	5	37	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
603064--603110	18	2.5	20	76	10	55	51	4	21	23	1.65
603427--603474	20	2.2	21	85	10	62	56	2	8	33	1.41
620864--620999	61	2.2	60	83	3	157	23	24	16	35	1.95
621913--621959	20	2.3	20	88	0	67	34	29	19	17	1.94
621996--622060	19	3.4	20	89	8	100	23	21	16	38	1.93
622607--622662	28	2.0	28	82	6	69	32	7	14	46	1.71
622798--622865	35	1.9	35	81	0	82	29	16	19	35	1.93
623698--623894	61	3.2	62	76	13	167	17	21	21	39	1.93
624067--624115	25	2.0	25	100	0	98	8	12	24	55	1.64
625210--625269	16	3.8	16	88	0	84	11	10	20	58	1.61
625207--625259	26	2.0	26	85	7	72	11	9	18	60	1.57
629829--629917	20	4.4	20	81	5	108	26	26	21	24	1.99
630733--630786	24	2.2	24	93	0	90	20	18	20	40	1.91
633140--633422	140	2.0	140	97	0	530	28	12	14	43	1.83
633393--633523	20	6.8	20	75	10	130	34	19	19	26	1.96
633393--633563	74	2.3	74	87	2	236	35	19	19	25	1.95
633562--633625	20	3.2	20	86	0	83	18	17	18	45	1.86
633759--633795	14	2.6	14	100	0	74	48	21	0	29	1.50
635184--635306	42	2.9	42	80	7	142	23	17	37	21	1.94
635184--635296	21	5.4	21	73	4	93	22	18	37	22	1.94
635781--635822	19	2.2	20	91	4	68	50	23	11	14	1.76
635809--635855	20	2.3	20	85	0	67	36	23	19	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
635849--635931	33	2.5	34	84	2	105	45	15	20	18	1.85
635891--635948	20	2.9	20	94	0	98	48	15	20	15	1.81
635862--635931	34	2.1	33	86	2	95	48	15	18	17	1.81
635944--635983	19	2.1	19	90	0	62	10	17	30	42	1.82
635953--635989	19	1.9	19	94	0	65	5	18	27	48	1.70
635959--636038	33	2.4	33	85	0	97	11	20	22	46	1.82
637947--637995	20	2.5	20	89	0	71	36	26	18	18	1.94
638681--638725	19	2.3	19	84	3	54	22	17	31	28	1.97
638691--638727	19	1.9	19	94	0	65	21	16	29	32	1.95
639438--639515	40	2.0	40	82	5	95	17	37	28	16	1.92
639477--639581	51	2.1	51	83	7	133	17	37	32	13	1.88
639495--639596	51	2.0	51	84	7	136	16	34	34	14	1.90
640587--640654	29	2.3	29	94	0	118	30	35	26	7	1.84
641452--641503	21	2.5	22	75	6	54	38	0	7	53	1.30
641986--642029	23	2.0	23	81	4	54	40	0	9	50	1.34
642154--642197	23	2.0	23	81	4	54	40	0	9	50	1.34
641970--642316	168	2.1	169	97	1	669	40	6	12	40	1.69
645081--645141	26	2.3	26	83	10	79	34	4	1	59	1.29
646155--646356	85	2.4	83	84	2	251	35	18	18	28	1.94
646155--646393	85	2.8	85	81	1	203	34	19	18	28	1.95
647051--647086	12	3.2	12	92	7	58	44	22	0	33	1.53
648586--648645	26	2.3	26	80	11	77	33	3	1	61	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
648586--648653	26	2.7	25	80	8	75	35	2	1	60	1.21
651822--651862	21	2.0	21	85	0	55	41	12	0	46	1.41
657721--657774	20	2.6	21	82	5	65	33	18	24	24	1.97
660646--661166	91	5.7	92	83	5	623	24	21	15	38	1.92
660646--661170	182	2.9	182	86	2	727	24	21	15	38	1.92
663397--663457	28	2.2	28	87	0	86	21	8	36	34	1.83
664409--664443	2	17.5	2	100	0	70	51	0	0	48	1.00
671734--671805	37	1.9	37	94	0	126	45	16	6	30	1.74
674322--674517	43	4.6	42	80	9	204	32	18	21	27	1.97
678017--678105	41	2.2	41	81	0	97	32	14	14	38	1.87
678109--678281	80	2.1	80	81	10	192	31	17	20	31	1.95
678292--679753	582	2.5	583	85	2	2013	30	16	17	36	1.91
682494--682541	2	25.5	2	79	12	57	52	2	0	45	1.12
682494--682541	15	3.2	15	90	0	69	52	2	0	45	1.12
682494--682548	11	5.3	11	80	8	53	52	1	0	45	1.11
683358--683409	21	2.5	21	81	3	61	38	19	25	17	1.93
683395--683524	60	2.2	60	85	0	170	35	24	16	23	1.95
683399--683511	20	5.7	20	80	8	95	31	25	17	24	1.97
683398--683530	20	6.7	19	77	11	81	33	24	17	24	1.96
683694--683732	20	2.0	20	90	5	62	23	43	17	15	1.87
684044--685057	105	9.7	105	96	1	1869	22	18	25	33	1.96
684044--685057	520	1.9	525	96	1	1903	22	18	25	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
697002--697040	20	2.0	20	89	0	60	5	43	38	12	1.65
698691--698729	16	2.4	16	100	0	78	23	25	20	30	1.98
701025--701061	2	19.0	2	88	5	58	54	0	0	45	1.00
701653--701699	19	2.7	17	81	18	53	55	4	0	40	1.19
702356--702391	18	2.0	18	88	0	54	69	0	13	16	1.19
702364--702424	23	2.7	23	85	10	72	72	1	8	18	1.18
702364--702424	14	4.4	14	74	14	54	72	1	8	18	1.18
702522--702558	14	2.6	15	83	12	51	78	0	8	13	0.96
702605--702657	15	3.6	14	78	14	54	75	1	7	15	1.11
704431--704511	30	2.8	30	83	9	98	34	13	22	29	1.92

Tables:   1   2   3   4   5   6   7   8