genome.fa.s5203.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005203.1 Hibiscus syriacus cultivar Beakdansim tig00011761_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1490345

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 934 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1316086--1316255	88	2.0	87	82	12	208	25	15	5	52	1.65
1316325--1316509	45	4.2	45	72	18	158	21	22	8	48	1.76
1316241--1316554	131	2.4	128	89	6	474	23	21	7	47	1.76
1316182--1316592	43	9.7	43	70	13	187	24	19	7	48	1.75
1322821--1322944	60	2.1	60	86	6	171	33	16	16	33	1.92
1336245--1336322	41	1.9	40	89	2	120	25	11	17	44	1.83
1340347--1340388	19	2.3	19	84	8	52	47	7	7	38	1.58
1351170--1351229	21	2.8	21	82	5	75	23	31	26	18	1.97
1353759--1353800	21	2.0	21	90	0	66	19	42	26	11	1.85
1360998--1361050	19	2.7	19	83	13	72	64	0	1	33	1.05
1361002--1361050	12	3.9	12	75	19	55	63	0	2	34	1.06
1361092--1361146	27	2.1	27	89	3	85	40	16	7	36	1.76
1361107--1361146	15	2.9	15	85	14	59	40	17	7	35	1.78
1361124--1361359	38	6.6	34	75	12	179	39	9	4	45	1.58
1361124--1361417	35	8.1	35	77	10	209	40	8	5	46	1.56
1361120--1361378	68	3.6	69	76	11	220	40	9	4	45	1.57
1362966--1363039	20	4.0	20	71	26	65	24	8	5	62	1.44
1362982--1363039	19	3.2	19	69	30	63	25	6	3	63	1.35
1375676--1375836	76	2.1	74	84	6	200	39	2	6	52	1.40
1375810--1375854	14	3.3	14	78	6	56	40	0	4	55	1.20
1383020--1383061	18	2.3	19	84	12	61	61	4	9	23	1.45
1390712--1390770	29	2.0	29	96	0	109	25	13	13	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1392841--1392911	22	3.3	22	90	3	101	63	4	2	29	1.27
1392839--1392901	6	10.8	6	78	10	51	61	3	3	31	1.27
1392861--1392914	28	2.0	27	88	3	81	66	3	1	27	1.19
1392889--1392928	13	2.9	13	88	7	53	65	10	0	25	1.24
1392861--1392928	28	2.5	28	83	9	79	64	7	1	26	1.28
1393479--1393513	6	5.8	6	96	0	61	0	11	20	68	1.20
1394002--1394060	11	5.0	12	74	16	52	57	1	1	38	1.19
1394001--1394069	18	4.1	17	75	20	58	59	1	1	37	1.15
1394001--1394068	13	5.3	13	76	15	70	58	1	1	38	1.16
1394283--1394356	20	3.7	20	71	10	60	37	18	21	21	1.94
1394512--1394598	41	2.1	41	82	4	104	39	20	18	21	1.93
1394539--1394602	21	3.1	21	69	13	60	39	20	17	23	1.92
1394548--1394604	20	2.8	21	73	10	64	36	22	17	22	1.94
1394227--1394910	248	2.8	248	90	1	1093	35	17	16	31	1.91
1395626--1395750	65	1.9	65	86	3	180	32	22	8	36	1.83
1403315--1403374	16	3.6	18	76	19	67	61	0	1	36	1.06
1403316--1403382	19	3.7	17	76	21	57	62	0	1	35	1.04
1403315--1403376	11	5.4	11	78	17	56	61	0	1	37	1.06
1403315--1403377	15	4.1	16	76	17	71	61	0	1	36	1.05
1407613--1407683	14	4.7	14	74	16	70	47	15	0	36	1.46
1407613--1407720	47	2.3	47	96	0	198	45	15	0	37	1.53
1410783--1410815	14	2.5	13	86	13	50	78	0	6	15	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1410783--1410816	13	2.6	14	90	9	54	79	0	5	14	0.91
1412856--1412902	23	2.0	23	88	8	69	68	0	4	27	1.08
1414478--1414507	2	15.0	2	100	0	60	50	0	0	50	1.00
1417919--1417945	3	9.0	3	100	0	54	0	0	33	66	0.92
1424496--1424608	31	3.6	31	73	11	104	34	19	16	29	1.94
1430732--1430794	16	3.9	16	93	0	99	20	19	12	47	1.81
1430728--1430798	32	2.2	32	94	0	124	19	21	14	45	1.85
1430992--1431018	13	2.1	13	100	0	54	55	0	0	44	0.99
1431057--1431106	23	2.1	24	92	3	84	46	0	6	48	1.27
1431355--1431393	11	3.5	11	82	6	51	53	2	2	41	1.28
1433280--1433343	22	3.1	22	70	25	75	48	15	6	29	1.70
1433248--1433343	40	2.4	40	91	0	147	46	14	7	31	1.72
1433279--1433336	18	2.9	20	72	23	59	50	15	6	27	1.70
1433699--1433733	15	2.4	14	90	9	52	57	0	20	22	1.41
1434181--1434331	6	24.3	6	70	20	57	49	1	1	47	1.21
1434179--1434271	27	3.4	27	79	19	95	50	1	0	48	1.07
1434201--1434296	18	4.9	20	67	32	66	50	0	1	48	1.07
1434167--1434301	27	4.9	26	73	23	91	48	0	0	50	1.11
1434212--1434327	33	3.4	33	80	14	112	50	1	1	46	1.22
1434282--1434351	31	2.3	30	84	13	99	50	2	2	44	1.31
1434369--1434410	22	2.0	21	90	9	68	50	9	4	35	1.56
1434503--1434560	24	2.5	24	86	5	75	46	6	6	39	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1434527--1434591	20	3.5	19	78	17	75	41	10	6	41	1.65
1434590--1434660	37	1.9	37	83	11	92	38	11	9	40	1.74
1434722--1434798	7	11.4	7	74	13	72	15	0	33	50	1.44
1434734--1434758	13	1.9	13	100	0	50	8	0	40	52	1.31
1434735--1434800	33	2.0	33	93	0	114	15	0	33	51	1.43
1434728--1434798	20	3.5	20	82	3	81	14	0	35	50	1.43
1435183--1435331	76	2.0	76	87	2	219	44	5	2	47	1.40
1435220--1435273	24	2.3	23	81	12	65	38	5	1	53	1.35
1435309--1435505	13	15.3	13	69	16	101	43	3	5	47	1.42
1435338--1435380	18	2.3	19	80	12	52	44	2	4	48	1.36
1435344--1435491	18	8.3	18	68	22	71	45	2	6	45	1.42
1435338--1435505	90	1.9	90	93	2	293	44	2	5	47	1.38
1435380--1435451	28	2.7	26	75	8	72	44	4	6	44	1.50
1441187--1441236	22	2.4	21	80	9	57	52	8	0	40	1.31
1448050--1448101	16	3.5	14	77	12	50	57	0	3	38	1.17
1448994--1449047	23	2.3	23	75	6	56	51	14	20	12	1.75
1449006--1449051	23	2.0	23	83	8	58	47	17	19	15	1.82
1458289--1458328	21	1.9	21	89	0	62	37	7	17	37	1.78
1458465--1458516	21	2.5	20	81	6	59	44	5	1	48	1.38
1458809--1458939	51	2.6	51	85	0	172	46	13	12	27	1.79
1459130--1459173	20	2.2	20	91	0	70	34	11	18	36	1.86
1462046--1462100	16	3.4	16	76	14	51	29	5	14	50	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1462586--1462635	20	2.5	19	78	9	55	36	8	14	42	1.74
1462721--1462758	20	1.9	20	88	0	58	31	18	28	21	1.97
1464779--1464887	41	2.6	42	85	2	159	55	15	4	24	1.59
1481688--1481727	20	2.0	20	85	0	53	55	22	15	7	1.65
1481716--1481749	14	2.5	13	85	4	50	58	29	8	2	1.43
1485822--1485859	17	2.2	18	90	4	60	39	2	0	57	1.12

Tables:   1   2   3   4   5   6   7   8

The End!