genome.fa.s5203.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005203.1 Hibiscus syriacus cultivar Beakdansim tig00011761_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1490345

Tables:   1   2   3   4   5   6   7   8   

This is table  7  of  8  ( 934 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1007321--1007573	20	12.7	20	78	10	130	22	29	19	28	1.98
1007440--1007573	40	3.3	40	91	3	198	18	26	21	32	1.97
1011582--1011610	2	14.5	2	100	0	58	51	0	0	48	1.00
1012025--1012086	25	2.5	26	84	5	83	66	3	4	25	1.27
1014324--1014447	64	1.9	64	85	0	167	34	17	20	27	1.95
1014474--1014511	20	1.9	20	94	0	67	31	18	23	26	1.97
1016258--1016315	23	2.5	23	91	0	89	18	27	24	29	1.98
1019668--1019810	64	2.2	63	86	6	198	32	18	23	25	1.97
1019818--1019855	20	1.9	20	100	0	76	34	21	21	23	1.97
1021594--1021652	23	2.6	23	91	0	100	20	27	23	28	1.99
1024986--1025148	64	2.5	65	82	3	195	31	17	24	25	1.97
1025136--1025192	20	2.6	23	89	10	84	31	21	22	24	1.98
1026933--1026990	23	2.5	23	88	0	89	20	27	24	27	1.99
1028361--1028474	30	3.7	30	90	3	174	40	5	1	52	1.34
1030348--1030380	7	4.6	7	96	3	57	0	12	0	87	0.53
1033770--1033799	2	15.0	2	100	0	60	50	0	0	50	1.00
1036250--1036322	2	36.5	2	100	0	146	50	0	0	49	1.00
1045667--1045808	39	3.3	45	78	11	129	20	30	23	25	1.98
1051893--1051969	39	2.0	39	92	0	127	19	28	23	28	1.98
1064657--1064696	21	1.9	21	84	0	53	40	12	2	45	1.56
1071986--1072055	36	2.0	36	85	2	97	31	12	10	45	1.75
1072503--1072580	21	3.6	21	75	14	61	30	6	0	62	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1074267--1074303	14	2.6	14	91	0	56	64	18	8	8	1.45
1074268--1074317	14	3.6	14	86	0	55	64	20	6	10	1.45
1075335--1076152	409	2.0	409	90	2	1293	30	19	14	35	1.92
1078049--1078117	23	3.1	22	70	13	61	23	20	24	31	1.98
1079259--1079725	44	10.7	44	69	5	239	32	20	16	30	1.95
1079259--1079532	87	3.2	86	70	6	239	31	20	16	31	1.94
1079366--1079772	132	3.1	131	88	2	611	31	21	15	30	1.95
1081226--1081550	154	2.1	153	94	3	577	40	35	8	15	1.78
1084453--1084494	17	2.5	17	80	7	50	45	0	2	52	1.13
1086468--1086502	15	2.4	15	85	4	54	60	0	0	40	0.97
1093367--1094479	575	1.9	570	83	5	1440	34	13	16	35	1.88
1096516--1096603	42	2.1	41	81	8	97	23	7	1	67	1.24
1096580--1096617	18	2.1	18	90	0	58	21	2	0	76	0.91
1096576--1096621	10	4.7	10	78	13	51	23	2	0	73	0.94
1096576--1096631	28	2.0	29	82	6	71	23	3	0	73	0.99
1098544--1098616	27	2.7	27	77	12	78	61	5	4	28	1.37
1098597--1098624	14	2.0	14	100	0	56	71	7	0	21	1.09
1098859--1098927	19	3.5	18	75	19	66	40	20	20	18	1.92
1098856--1099113	41	6.5	41	87	7	336	38	21	18	20	1.94
1098899--1099042	20	7.1	20	67	4	99	39	20	20	19	1.93
1098919--1099033	21	5.6	21	70	4	99	36	23	19	20	1.95
1099006--1099113	35	2.9	35	86	8	126	37	22	18	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1099041--1099109	21	3.3	21	67	4	59	36	24	17	21	1.95
1098965--1099113	76	2.0	76	91	0	244	37	22	18	21	1.94
1099052--1099117	21	3.2	21	67	4	62	39	25	16	18	1.91
1099297--1099326	14	2.1	14	93	0	51	56	0	3	40	1.16
1102922--1102965	23	1.9	23	90	9	72	4	13	0	81	0.83
1118787--1118831	20	2.2	20	88	0	63	24	11	28	35	1.90
1119618--1119670	26	2.0	26	96	0	97	39	20	16	22	1.92
1128043--1128081	17	2.4	17	86	4	53	41	12	0	46	1.42
1128224--1128294	20	3.3	20	76	19	72	23	32	19	23	1.98
1130862--1130905	18	2.3	20	88	11	67	52	6	4	36	1.49
1130946--1131004	19	3.0	19	90	9	100	30	11	6	50	1.65
1170339--1172011	105	16.0	106	92	2	2408	33	26	17	22	1.96
1178609--1180274	105	16.0	106	91	2	2381	33	26	17	22	1.96
1178609--1180274	209	8.0	210	92	2	2442	33	26	17	22	1.96
1183753--1183795	2	21.5	2	100	0	86	51	0	0	48	1.00
1184182--1184233	18	2.9	18	97	0	95	28	21	25	25	1.99
1198056--1198107	18	2.9	18	100	0	104	28	21	26	23	1.99
1214500--1214669	87	2.0	83	94	5	297	30	14	28	25	1.95
1218128--1218161	13	2.6	13	86	13	52	8	14	0	76	1.01
1218568--1218606	12	3.2	12	88	3	51	30	2	2	64	1.21
1222669--1222846	65	2.8	64	82	9	186	29	19	16	33	1.94
1226734--1226797	32	2.0	32	100	0	128	46	15	15	21	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1228492--1228549	29	2.0	29	100	0	116	34	6	17	41	1.76
1228607--1228685	23	3.5	22	77	6	88	27	22	20	29	1.98
1228586--1228687	44	2.3	43	81	9	118	28	22	20	28	1.99
1229152--1229196	19	2.4	19	92	0	72	42	11	8	37	1.72
1231403--1231536	64	2.1	64	81	13	161	32	22	15	29	1.95
1233884--1234248	201	1.8	201	84	0	505	36	19	18	26	1.94
1235328--1235358	10	3.0	10	95	4	53	32	0	0	67	0.91
1237551--1237915	201	1.8	201	84	0	505	36	19	18	25	1.94
1239357--1239404	19	2.4	20	79	10	53	45	0	2	52	1.12
1244393--1244462	30	2.3	31	97	2	133	17	24	30	28	1.97
1245804--1246053	122	2.0	123	98	0	484	31	8	11	49	1.67
1246437--1246466	10	3.0	10	100	0	60	30	0	0	70	0.88
1246755--1246838	28	2.9	28	83	11	84	50	3	0	46	1.19
1250035--1250065	10	3.0	10	90	9	53	29	0	0	70	0.87
1250035--1250065	11	2.9	11	95	4	55	29	0	0	70	0.87
1255288--1255396	54	2.0	54	85	0	146	21	11	16	51	1.75
1259214--1259314	35	3.1	35	87	12	144	33	18	21	25	1.97
1259261--1259318	29	2.0	28	96	3	107	39	17	22	20	1.92
1259871--1259939	34	2.0	35	97	2	131	26	7	34	31	1.84
1260078--1260131	27	2.0	27	100	0	108	37	25	18	18	1.94
1261992--1262017	2	13.0	2	100	0	52	50	0	0	50	1.00
1262968--1263011	22	2.0	22	95	4	81	40	31	4	22	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1265131--1265277	45	3.2	45	83	1	159	27	18	7	46	1.76
1265298--1265500	68	3.0	68	88	2	295	29	24	15	31	1.95
1265847--1266054	59	3.5	59	86	3	276	39	18	9	33	1.82
1266063--1266236	54	3.2	54	90	0	260	34	21	17	26	1.95
1273829--1273884	20	2.7	22	83	10	73	32	17	25	25	1.97
1279497--1279573	22	3.9	19	75	21	70	27	32	22	18	1.97
1279824--1280072	123	2.0	124	86	3	351	23	16	12	47	1.80
1285391--1285476	23	3.8	23	72	7	77	27	26	18	26	1.98
1285424--1285494	20	3.3	20	70	12	61	25	32	21	21	1.98
1285400--1285493	44	2.2	44	88	1	136	25	29	20	24	1.99
1290020--1290067	23	2.1	23	100	0	96	43	35	8	12	1.73
1292198--1292367	58	3.0	57	87	4	236	35	8	12	43	1.73
1292214--1292386	57	3.0	55	85	7	211	38	8	10	42	1.70
1292310--1292468	80	2.0	80	87	4	234	40	10	8	40	1.71
1292252--1292503	136	1.9	136	84	5	348	39	9	10	40	1.72
1294898--1297731	939	3.0	948	97	1	5392	43	12	9	33	1.76
1298311--1298572	145	1.8	145	86	3	384	21	25	19	32	1.97
1299333--1299670	111	3.0	112	90	2	520	27	17	23	30	1.97
1299555--1300033	133	3.6	133	88	3	712	27	18	22	31	1.97
1300604--1300665	32	1.9	32	90	0	97	35	25	9	29	1.88
1301713--1301751	12	3.2	12	92	3	60	0	10	2	87	0.65
1301713--1301756	23	2.0	22	86	4	61	0	11	4	84	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1302393--1302445	27	1.9	28	84	3	72	45	9	3	41	1.54
1309071--1309358	144	2.0	146	82	2	348	21	22	22	32	1.98
1310228--1310476	45	5.5	45	77	6	225	37	9	14	37	1.80
1310227--1310457	90	2.6	89	80	5	250	38	10	13	37	1.80
1310624--1310737	58	2.0	58	85	0	156	34	7	11	46	1.69
1310864--1310938	39	1.9	39	88	0	114	36	6	16	41	1.74
1310920--1310964	22	2.0	23	91	4	74	13	4	20	62	1.48
1313563--1313605	22	2.0	22	86	9	61	58	0	37	4	1.19
1316088--1316234	45	3.5	40	75	14	125	27	15	5	51	1.65
1316085--1316206	45	2.8	45	81	5	142	26	17	4	51	1.65

Tables:   1   2   3   4   5   6   7   8