genome.fa.s6189.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006189.1 Hibiscus syriacus cultivar Beakdansim tig00014728_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  980383

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 735 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208852--208882	14	2.2	14	100	0	62	35	0	0	64	0.94
210140--210179	21	1.9	21	85	10	55	45	2	2	50	1.28
211701--211742	5	7.8	5	94	5	57	35	0	0	64	0.94
211704--211745	3	15.0	3	85	14	63	35	0	0	64	0.94
211801--211845	24	1.9	24	86	4	65	37	37	15	8	1.79
216324--216366	18	2.4	18	88	0	59	72	0	4	23	1.04
216723--216949	76	3.1	73	79	10	237	55	12	1	30	1.45
218816--218863	20	2.4	20	89	6	71	72	0	2	25	0.95
218816--218863	5	9.6	5	77	8	53	72	0	2	25	0.95
218873--218938	22	3.0	22	80	6	80	74	4	6	15	1.18
223400--223442	18	2.4	18	88	0	59	72	0	4	23	1.04
224035--224260	76	3.1	70	79	12	247	56	12	0	30	1.42
228151--228193	22	1.9	23	85	4	61	46	18	11	23	1.82
228473--228518	24	1.9	24	90	0	74	28	17	8	45	1.78
229434--229500	31	2.2	31	86	0	89	47	19	14	17	1.82
237461--237488	13	2.2	13	100	0	56	25	14	39	21	1.91
241225--241284	30	2.0	29	87	3	84	48	8	0	43	1.33
241225--241284	29	2.0	30	84	9	79	48	8	0	43	1.33
242460--242575	53	2.2	53	95	0	205	43	11	19	25	1.84
262332--262357	12	2.2	12	100	0	52	34	0	0	65	0.93
264448--264472	13	1.9	13	100	0	50	64	4	16	16	1.44
265877--266050	46	3.8	46	86	3	226	33	21	5	39	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266140--266271	59	2.2	59	83	0	165	28	25	17	28	1.97
266383--266622	96	2.5	96	95	0	426	42	15	10	31	1.81
270946--270985	21	2.0	20	95	5	71	40	17	17	25	1.91
271725--271776	24	2.2	24	82	0	59	23	17	23	36	1.95
275586--275672	6	15.3	6	75	12	78	5	14	0	79	0.91
275593--275696	32	3.1	34	76	14	108	8	12	0	78	0.95
279877--279956	6	14.2	6	73	13	64	7	12	0	80	0.91
279874--279954	11	7.5	10	84	12	90	7	11	0	81	0.87
279874--279956	33	2.5	32	78	17	107	7	12	0	80	0.89
279874--279956	27	3.0	27	80	16	91	7	12	0	80	0.89
280014--280052	21	1.9	20	85	15	53	41	23	10	25	1.86
282779--282952	46	3.8	46	87	3	235	33	21	6	38	1.79
283301--283524	96	2.3	96	98	1	432	43	15	9	31	1.78
289450--289498	12	3.9	13	72	20	50	71	4	8	16	1.26
289452--289502	25	2.1	24	92	7	86	74	3	9	11	1.19
301391--301515	46	2.8	45	86	8	182	39	8	21	31	1.82
302671--302744	19	3.8	19	85	7	87	28	18	28	24	1.98
303064--303806	59	12.6	59	85	4	1018	37	10	21	30	1.88
303065--303866	118	6.8	118	92	2	1231	38	10	20	30	1.87
303942--304911	44	21.9	44	80	7	1047	44	6	19	29	1.76
303945--304916	90	10.9	90	89	4	1218	44	6	19	29	1.76
304629--304705	23	3.3	23	62	27	54	46	7	19	25	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
305372--305430	29	2.0	29	83	0	73	23	27	11	37	1.90
309294--309338	22	2.0	22	86	4	63	64	8	11	15	1.49
327078--327692	59	10.4	57	80	8	528	36	10	20	32	1.87
327071--327664	236	2.5	236	86	5	817	36	10	20	32	1.87
327071--327562	118	4.2	118	93	2	776	36	9	20	32	1.86
327878--328106	44	5.2	44	96	2	433	41	6	20	31	1.78
327901--328014	21	5.2	21	62	15	61	42	7	18	30	1.79
331659--331696	13	3.0	13	92	3	60	73	0	26	0	0.83
332426--332461	14	2.6	14	90	0	54	25	13	2	58	1.49
332918--332955	2	19.0	2	100	0	76	50	0	0	50	1.00
342686--342984	117	2.6	116	89	4	458	38	16	20	23	1.92
343516--343581	29	2.3	29	97	0	123	6	25	39	28	1.80
343948--343981	17	2.0	17	88	0	50	26	8	8	55	1.59
346175--346204	2	15.0	2	100	0	60	50	0	0	50	1.00
348761--348799	20	1.9	21	89	5	62	56	10	10	23	1.63
358260--358345	31	2.7	31	78	1	82	13	29	29	27	1.95
360278--360302	7	3.6	7	100	0	50	88	0	0	12	0.53
364356--364400	21	2.1	21	91	0	72	20	24	20	35	1.96
367283--367326	19	2.3	20	80	11	56	13	20	31	34	1.92
367296--367342	19	2.5	19	86	6	60	14	25	31	27	1.95
367339--367365	14	1.9	14	100	0	54	22	48	22	7	1.75
367352--367395	22	2.0	22	90	0	70	18	45	22	13	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374677--374724	22	2.2	22	92	0	78	18	41	22	16	1.90
379528--379712	29	6.4	29	94	0	316	49	17	4	28	1.67
379620--379671	17	3.4	17	65	25	51	51	17	3	26	1.62
379687--379797	58	1.9	58	83	7	145	43	17	7	32	1.76
386998--387269	29	9.4	29	94	1	447	50	16	4	28	1.66
388225--388367	59	2.4	59	92	0	232	18	13	27	39	1.89
388225--388404	59	3.0	59	87	2	209	18	15	26	40	1.89
391388--391797	54	7.7	54	79	7	383	23	24	19	32	1.98
391388--391797	108	3.9	109	79	8	438	23	24	19	32	1.98
391559--391910	156	2.3	156	85	4	462	25	25	17	32	1.97
391687--391803	55	2.1	55	91	0	189	27	23	17	30	1.97
391797--391947	55	3.0	49	81	14	191	26	25	15	33	1.95
391845--391964	55	2.2	55	95	0	213	30	25	13	30	1.94
393004--393056	8	6.6	8	77	14	56	16	9	0	73	1.08
402889--402926	16	2.3	17	95	4	69	34	28	13	23	1.92
405617--405658	19	2.2	19	95	0	75	19	21	7	52	1.69
407687--407739	15	3.6	15	82	5	72	22	32	24	20	1.98
411438--411490	27	2.0	27	88	0	79	41	1	16	39	1.60
412962--413139	90	2.0	90	89	0	275	36	12	6	44	1.69
421633--421665	13	2.5	13	100	0	66	6	18	9	66	1.40
422142--422183	20	2.2	19	87	8	59	38	7	14	40	1.73
422237--422274	19	2.1	18	90	9	60	44	5	7	42	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
422233--422283	19	2.6	19	76	14	59	43	3	7	45	1.51
422628--422662	14	2.5	14	90	0	52	31	5	20	42	1.75
422993--423073	19	4.3	19	72	20	64	48	1	1	49	1.17
423161--423230	32	2.2	32	85	10	90	50	0	1	48	1.09
423178--423219	22	1.9	22	90	0	66	52	0	0	47	1.00
423204--423291	11	7.4	12	71	17	53	45	0	2	52	1.13
429374--429414	17	2.4	17	95	0	73	26	31	29	12	1.92
429919--429947	13	2.2	13	100	0	58	31	31	24	13	1.94
430187--430212	8	3.2	8	100	0	52	34	11	0	53	1.37
431204--431239	2	18.5	2	88	5	56	47	0	2	50	1.15
432929--432981	2	26.5	2	100	0	106	49	0	0	50	1.00
436010--436072	3	20.7	3	90	9	101	65	0	1	33	1.03
436209--437498	134	9.6	134	86	1	1651	27	16	25	30	1.97
463950--464053	5	20.8	5	76	7	95	71	3	3	21	1.18
464004--464056	16	3.4	15	78	5	61	77	3	1	16	1.01
464003--464066	26	2.5	26	86	0	74	71	4	6	17	1.24
468159--468208	21	2.4	21	86	0	64	16	20	20	44	1.87
469688--469728	15	2.7	15	82	10	57	70	0	2	26	0.99
470700--470733	12	2.8	12	100	0	68	29	35	8	26	1.87
473276--473495	109	2.0	111	93	5	385	43	11	15	30	1.82
493561--493594	16	2.1	17	88	5	52	64	0	8	26	1.22
495141--495167	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
510089--510128	18	2.2	18	95	0	71	17	0	60	22	1.37
510098--510143	18	2.6	18	89	0	65	21	0	58	19	1.39
510086--510155	24	2.9	24	85	4	88	21	0	55	22	1.43
510101--510143	9	4.8	9	82	0	59	20	0	58	20	1.40
513267--513613	172	2.0	173	99	0	687	31	24	14	29	1.95
516211--516255	18	2.5	18	92	0	72	66	2	15	15	1.35
518114--518152	21	1.9	19	90	10	60	56	5	10	28	1.54
520586--520637	22	2.6	19	84	9	68	78	0	3	17	0.89
520586--520637	13	3.8	13	76	18	61	78	0	3	17	0.89
522942--522977	18	2.0	18	88	0	54	55	2	16	25	1.55

Tables:   1   2   3   4   5   6   7