genome.fa.s6189.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01006189.1 Hibiscus syriacus cultivar Beakdansim tig00014728_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  980383

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 735 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
531986--532027	21	2.0	21	90	0	66	30	19	19	30	1.96
535408--535456	23	2.1	23	85	7	64	28	2	12	57	1.46
547732--547856	46	2.8	45	87	6	173	30	22	7	40	1.81
547961--548110	40	3.8	40	97	0	273	32	28	16	22	1.96
550457--550483	2	13.5	2	100	0	54	51	0	0	48	1.00
553287--553337	26	2.0	26	96	0	93	27	25	19	27	1.99
567338--567385	5	9.6	5	82	8	62	77	0	4	18	0.93
570215--570250	18	2.0	18	88	0	54	58	0	13	27	1.36
573999--574089	43	2.1	43	87	4	130	35	18	13	32	1.90
582384--582412	12	2.5	12	94	5	51	6	10	44	37	1.65
582454--582539	6	14.8	6	82	14	83	74	1	8	16	1.11
582454--582541	18	5.0	17	81	4	95	73	1	7	17	1.12
582455--582528	24	3.2	23	94	5	123	74	1	6	17	1.11
589392--589434	18	2.4	18	92	0	68	67	0	13	18	1.23
590213--590251	20	1.9	21	85	15	55	53	5	15	25	1.62
598293--598470	90	2.0	90	90	0	284	45	6	11	36	1.66
604717--604894	90	2.0	90	92	0	293	44	7	12	35	1.70
606833--606971	74	1.9	74	92	0	233	33	16	7	41	1.77
607362--607427	20	3.3	20	97	0	123	31	31	13	22	1.93
612524--612581	30	2.0	30	86	10	84	58	10	1	29	1.41
612524--612606	29	2.8	29	80	8	87	55	14	1	28	1.47
620010--620078	31	2.2	31	92	2	111	31	15	20	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632692--632727	18	1.9	19	94	5	65	36	5	2	55	1.38
632913--632953	19	2.2	19	87	12	59	36	9	2	51	1.48
636257--636299	18	2.4	18	92	0	68	20	6	0	72	1.08
636708--636750	21	2.0	21	82	8	52	67	4	23	4	1.28
639772--639827	22	2.7	20	83	5	67	32	16	23	28	1.96
639788--639826	20	2.1	18	86	13	53	33	15	23	28	1.95
639695--639883	95	2.0	94	88	5	283	33	15	24	25	1.95
639698--639917	95	2.3	95	84	5	259	34	15	24	26	1.94
640293--640582	45	6.4	45	93	0	483	39	9	20	31	1.84
641315--641366	2	26.0	2	100	0	104	50	0	0	50	1.00
643160--643186	2	13.5	2	100	0	54	51	0	0	48	1.00
645024--645221	94	2.1	93	88	3	290	34	15	25	24	1.94
645194--645247	20	2.6	20	85	5	63	33	11	24	31	1.90
645654--646033	45	8.4	45	94	0	636	39	9	20	31	1.84
646014--646078	34	1.9	34	93	0	112	36	9	24	29	1.86
646767--646794	2	14.0	2	100	0	56	50	0	0	50	1.00
650367--650419	15	3.5	15	85	10	56	24	3	0	71	1.02
650382--650419	5	7.6	5	87	0	58	21	2	0	76	0.91
650367--650415	10	4.9	10	79	0	53	26	4	0	69	1.06
654881--654920	18	2.2	18	86	8	55	22	10	0	67	1.20
664738--664790	14	4.1	14	79	18	69	13	13	16	56	1.67
664725--664789	24	2.6	24	92	4	103	15	13	15	55	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
665052--665092	10	3.8	10	82	17	55	7	9	21	60	1.52
665044--665109	23	2.8	22	82	11	78	7	9	22	60	1.52
665175--665207	16	2.1	16	100	0	66	6	12	24	57	1.57
665941--666004	12	5.3	12	71	14	51	29	18	6	45	1.74
665932--666004	36	2.0	36	89	5	112	30	19	8	42	1.80
665962--666007	24	1.9	24	90	0	74	28	17	8	45	1.78
684579--684683	55	2.0	53	84	5	140	41	10	24	22	1.85
685017--685053	6	6.2	6	87	12	58	18	16	16	48	1.81
685017--685053	13	3.1	12	88	11	58	18	16	16	48	1.81
688055--688306	123	2.0	124	85	2	337	36	15	24	23	1.93
688519--688766	124	2.0	125	94	0	435	31	18	26	23	1.97
690071--690488	36	11.4	36	90	3	606	34	23	19	22	1.96
690923--690947	13	1.9	13	100	0	50	32	24	20	24	1.98
690842--691070	93	2.5	93	94	0	395	30	18	22	28	1.97
691028--691292	42	6.1	42	70	14	155	27	19	24	28	1.98
691150--691174	13	1.9	13	100	0	50	40	16	20	24	1.91
690935--691261	134	2.4	134	93	1	555	29	17	23	29	1.97
691171--691244	22	3.5	22	69	14	64	25	18	22	32	1.97
691555--691833	54	5.2	54	91	0	425	33	21	26	18	1.97
696791--696819	3	9.7	3	100	0	58	34	0	34	31	1.58
698372--698439	30	2.3	30	100	0	136	33	26	7	32	1.84
706536--706663	63	2.0	63	100	0	256	27	21	15	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
709186--709215	15	2.0	15	93	0	51	63	13	3	20	1.43
709386--709411	11	2.4	11	100	0	52	80	0	0	19	0.71
709506--709535	14	2.1	15	93	6	53	30	3	0	66	1.07
710473--710499	14	1.9	14	100	0	54	44	25	0	29	1.54
715334--715385	20	2.6	21	84	6	72	28	15	28	26	1.96
715355--715496	54	2.6	53	84	5	167	29	19	21	30	1.97
716076--716165	23	4.0	23	80	15	116	23	20	26	30	1.98
716584--716623	20	2.0	20	85	9	55	32	0	12	55	1.38
717430--717492	15	4.2	15	79	0	63	23	53	1	20	1.54
721214--721284	31	2.3	31	87	0	106	18	14	15	52	1.75
721373--721415	19	2.3	19	84	8	52	60	6	0	32	1.23
721986--722033	14	3.4	14	100	0	96	31	22	33	12	1.91
732213--732239	3	9.0	3	100	0	54	66	0	0	33	0.92
735891--736949	4	266.2	4	98	1	2051	49	25	0	25	1.50
740028--740083	25	2.3	25	78	12	62	39	19	17	23	1.92
740050--740195	23	6.3	23	80	2	132	32	22	23	20	1.98
740057--740148	45	2.0	46	85	2	123	34	23	23	17	1.96
740272--740332	14	4.5	14	76	15	65	40	21	8	29	1.82
740814--740864	19	2.8	18	83	13	61	29	21	7	41	1.81
740814--740864	18	2.8	19	85	8	63	29	21	7	41	1.81
740907--740935	15	1.9	15	100	0	58	24	20	20	34	1.97
744179--744296	60	2.0	60	96	0	218	21	13	8	56	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
749479--749644	59	2.8	59	80	6	176	31	21	5	40	1.76
752037--752156	65	1.9	62	84	10	161	32	31	20	15	1.94
752491--752538	22	2.1	22	88	11	71	47	0	4	47	1.21
752608--752656	22	2.1	23	85	7	64	53	0	8	38	1.31
752845--752876	10	3.3	10	91	8	57	81	0	9	9	0.88
752845--752877	9	3.6	9	95	4	57	78	0	9	12	0.95
753382--754409	516	2.0	511	96	2	1900	40	18	14	26	1.89
756344--756376	17	1.9	17	93	0	57	60	15	6	18	1.54
756148--756375	102	2.2	102	94	0	404	50	19	9	21	1.75
756651--756800	6	25.3	6	75	2	97	7	5	42	44	1.55
756667--756752	17	4.9	17	78	10	75	5	9	45	39	1.60
756666--756740	29	2.6	29	82	6	89	5	10	45	38	1.62
756667--756723	23	2.4	23	85	2	69	5	14	43	36	1.67
756790--756830	19	2.0	21	86	9	59	4	7	51	36	1.51
757124--757150	10	2.7	10	100	0	54	48	7	33	11	1.67
757639--757739	32	3.4	27	75	18	78	52	0	0	46	1.07
757629--757711	24	3.5	24	79	17	84	54	1	0	44	1.08
757676--757892	15	14.5	14	64	26	56	48	2	4	44	1.34
757722--757791	31	2.3	30	84	13	99	50	2	2	44	1.31
758049--758092	15	2.6	18	79	17	58	40	9	9	40	1.68
758105--758173	35	1.9	37	85	5	97	37	11	10	40	1.75
758184--758249	7	9.7	7	81	6	64	18	0	33	48	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
758180--758249	14	5.1	14	79	6	72	18	0	31	50	1.48
758623--758692	23	2.8	24	79	12	70	47	7	1	44	1.39
758695--758724	13	2.3	13	94	0	51	40	3	6	50	1.45
758646--758780	73	1.9	70	85	6	180	44	5	2	47	1.39
758749--758798	18	2.8	18	87	0	73	34	6	2	58	1.34
758901--758981	13	5.9	13	71	19	58	43	3	4	48	1.42
758809--759006	96	2.0	98	90	4	312	43	4	5	46	1.44
758836--758999	47	3.4	48	70	16	142	45	3	4	46	1.40
761114--761138	9	2.8	9	100	0	50	8	8	12	72	1.29
764013--764074	31	2.1	29	85	11	81	43	3	1	51	1.27

Tables:   1   2   3   4   5   6   7