genome.fa.s7173.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007173.1 Hibiscus syriacus cultivar Beakdansim tig00018827_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1357898

Tables:   1   2   3   4   5   6   7   8   9   

This is table  3  of  9  ( 987 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394438--394520	37	2.3	37	87	2	114	42	14	20	22	1.88
395810--396159	183	1.9	183	94	0	610	30	20	21	27	1.98
400185--400234	2	25.5	2	95	4	93	52	0	0	48	1.00
400357--400511	3	50.3	3	69	23	58	67	0	2	29	1.04
400351--400406	27	2.0	27	93	6	94	75	0	0	25	0.81
400361--400511	45	3.3	47	72	20	133	67	0	2	29	1.04
400423--400490	33	2.1	33	89	8	104	72	0	0	27	0.85
400459--400513	23	2.3	23	84	9	67	61	0	3	34	1.13
400540--400627	2	44.5	2	73	15	58	55	1	3	39	1.24
400625--400667	18	2.5	17	85	7	61	67	2	4	25	1.22
400539--400660	65	1.9	65	85	10	169	59	1	4	35	1.27
401081--401149	34	2.0	34	94	0	120	31	14	11	42	1.82
409419--409459	18	2.3	18	100	0	82	29	21	21	26	1.99
410318--410523	53	4.0	53	78	9	235	35	10	19	34	1.86
411485--411541	27	2.1	28	80	9	64	50	1	3	43	1.29
412640--412703	30	2.1	30	91	5	103	7	12	62	17	1.52
412640--412703	15	4.3	15	74	7	58	7	12	62	17	1.52
412640--412716	30	2.8	26	75	16	75	7	12	62	16	1.53
418625--418670	7	6.6	7	89	0	65	17	0	43	39	1.49
418625--418676	14	3.7	14	84	0	59	19	0	40	40	1.51
418625--418676	21	2.5	21	83	0	68	19	0	40	40	1.51
420855--420998	39	3.8	38	74	13	129	43	11	7	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
420915--421003	40	2.3	39	81	13	110	40	8	6	43	1.62
420968--421083	60	1.9	61	81	11	141	50	6	6	37	1.52
420929--421175	133	1.8	133	79	9	286	46	9	7	36	1.65
421195--421394	60	3.4	59	87	4	262	42	12	6	38	1.69
421192--421600	58	7.0	58	82	5	346	41	12	7	38	1.71
421763--421879	45	2.6	45	83	2	137	38	17	8	35	1.81
423375--423441	23	2.6	26	81	11	77	31	1	1	65	1.10
423375--423453	3	28.0	3	71	21	55	30	2	1	65	1.13
423365--423453	19	4.6	19	76	8	74	28	3	1	67	1.14
425084--425133	10	5.2	9	79	13	55	18	2	6	74	1.12
425070--425133	33	1.9	34	87	9	96	18	1	6	73	1.12
429323--429439	44	2.7	43	80	10	114	42	23	11	23	1.85
431512--431576	21	3.1	21	73	8	51	24	6	38	30	1.80
435397--435439	16	2.7	15	80	16	50	13	6	0	79	0.93
436150--436218	19	3.6	19	71	13	61	27	0	5	66	1.14
436212--436253	20	2.1	20	95	0	75	26	0	2	71	0.98
436962--437057	17	5.5	17	80	7	111	46	10	6	36	1.63
436939--437055	35	3.3	36	84	7	141	47	9	6	36	1.63
438109--438168	12	5.0	12	76	8	59	55	13	16	15	1.70
438124--438186	24	2.6	24	92	0	99	52	12	15	19	1.74
441617--441701	32	2.7	31	77	13	93	27	32	27	12	1.93
441626--441701	32	2.4	31	84	4	98	30	32	23	13	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441856--441902	12	3.9	12	88	0	76	51	17	21	10	1.75
441847--441902	24	2.3	24	93	0	94	53	14	19	12	1.72
445685--445797	36	3.1	35	79	9	120	36	19	16	27	1.93
452186--452212	4	6.8	4	100	0	54	77	0	0	22	0.76
455550--455596	20	2.4	19	89	10	76	55	10	17	17	1.69
455338--455804	181	2.6	182	88	0	666	43	13	15	26	1.85
455740--455782	20	2.3	19	88	11	63	51	11	16	20	1.75
460350--460421	23	3.2	23	88	4	110	34	5	22	37	1.77
460888--460939	24	2.2	24	100	0	104	38	15	7	38	1.76
461583--461630	20	2.4	20	92	0	78	22	31	14	31	1.94
463475--463607	69	2.0	67	92	7	227	36	12	15	36	1.84
463729--463774	13	3.5	13	78	0	56	32	17	17	32	1.93
463730--463779	26	1.9	26	91	0	82	32	14	18	36	1.90
469031--469070	12	3.6	12	83	9	50	70	0	10	20	1.16
469054--469099	12	3.7	12	91	5	65	71	0	2	26	0.97
471170--471224	20	2.7	21	80	5	67	20	20	16	43	1.88
471226--471315	41	2.2	41	84	5	112	40	16	21	22	1.92
471226--471315	20	4.4	20	80	8	110	40	16	21	22	1.92
471302--471353	20	2.6	20	96	0	95	30	23	21	25	1.99
471879--471966	19	4.8	19	78	14	87	45	22	20	11	1.83
471879--471996	52	2.2	53	87	1	166	45	23	19	11	1.82
471992--472104	19	6.1	19	79	13	119	11	23	20	44	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
472040--472102	20	3.2	20	82	8	83	12	23	19	44	1.85
473797--474101	94	3.3	93	94	2	501	21	13	19	46	1.83
474545--474611	21	3.2	21	66	6	55	23	35	20	19	1.95
474493--474611	42	2.8	42	81	5	107	22	36	18	22	1.95
475962--475997	14	2.6	14	95	0	63	33	0	22	44	1.53
476114--476183	19	3.9	19	78	17	96	47	20	22	10	1.79
476120--476202	33	2.5	33	94	0	148	48	22	20	8	1.76
476208--476358	19	8.7	19	65	21	89	11	23	19	45	1.84
476212--476338	33	3.8	33	91	2	202	11	23	18	45	1.83
476264--476320	14	3.7	14	75	20	60	10	24	21	43	1.83
476312--476404	20	4.7	20	70	13	75	21	16	23	38	1.92
478653--478677	12	2.1	12	100	0	50	0	28	0	72	0.86
479650--479797	20	7.4	20	93	0	233	28	18	29	23	1.98
479785--479878	21	4.5	21	70	12	77	18	18	22	41	1.90
479645--479839	20	9.7	20	88	3	194	26	18	27	28	1.98
479787--479924	62	2.2	62	94	0	249	20	18	21	39	1.92
479931--479977	21	2.2	21	85	7	60	36	21	27	14	1.93
484991--485142	67	2.2	68	91	1	243	30	28	26	14	1.95
485753--485812	23	2.6	23	97	0	111	18	26	31	23	1.97
486401--486509	42	2.6	42	92	0	173	22	24	33	19	1.97
486401--486515	21	5.5	21	83	8	144	21	25	33	19	1.97
486519--486566	21	2.3	21	88	0	69	20	12	41	25	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488052--488116	27	2.4	27	82	5	69	58	4	0	36	1.19
488068--488121	17	3.2	17	78	2	56	59	3	0	37	1.15
491883--491927	2	23.0	2	90	4	74	48	0	0	51	1.00
496508--496548	2	20.5	2	100	0	82	51	0	0	48	1.00
499505--499552	15	3.0	16	82	14	55	64	4	0	31	1.12
503994--504148	30	5.2	30	75	4	152	56	9	15	18	1.65
503988--504148	60	2.7	60	87	1	216	56	9	14	18	1.66
505671--505720	3	15.7	3	80	12	55	66	2	2	30	1.14
505678--505720	20	2.2	19	87	4	59	65	2	2	30	1.18
505927--506253	131	2.5	131	80	7	358	25	16	31	26	1.96
506435--506511	29	2.7	29	82	6	102	44	16	9	29	1.79
506442--506519	29	2.7	30	80	6	88	43	19	10	26	1.83
506637--506704	33	2.1	33	91	0	109	29	19	17	33	1.95
506814--506875	24	2.7	22	79	15	72	48	4	12	33	1.63
507747--507834	14	6.0	14	77	9	77	1	20	6	71	1.15
507745--507815	8	9.4	7	77	10	61	0	19	5	74	1.01
507759--507800	7	5.6	8	81	13	54	0	16	7	76	1.00
507744--507866	50	2.6	44	77	10	120	1	19	6	72	1.15
507752--507870	14	8.2	14	71	14	62	1	20	6	71	1.17
511759--511892	30	4.5	30	77	0	117	57	8	13	20	1.62
511759--511940	60	3.0	60	78	4	165	58	8	13	19	1.60
511841--511910	30	2.3	30	80	0	86	61	8	11	18	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
513463--513508	20	2.4	19	82	7	56	67	2	2	28	1.14
522377--522474	49	2.0	49	97	0	187	28	12	7	52	1.65
522600--522642	21	2.0	23	86	9	63	46	2	2	48	1.27
525016--525064	22	2.2	22	100	0	98	18	34	22	24	1.96
525307--525332	2	13.0	2	100	0	52	50	0	0	50	1.00
525587--525631	15	2.8	17	74	19	51	8	17	2	71	1.23
527273--527364	44	2.1	44	83	0	112	41	19	15	23	1.89
530125--531374	319	4.0	317	88	3	1879	34	11	19	34	1.87
536872--537140	55	4.9	55	83	5	332	29	19	20	30	1.97
536859--537141	110	2.6	109	87	1	388	29	19	20	30	1.97

Tables:   1   2   3   4   5   6   7   8   9