genome.fa.s7173.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007173.1 Hibiscus syriacus cultivar Beakdansim tig00018827_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1357898

Tables:   1   2   3   4   5   6   7   8   9   

This is table  4  of  9  ( 987 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
538045--538079	16	2.2	16	89	0	52	62	0	5	31	1.18
538248--538294	15	3.4	14	77	19	53	61	0	0	38	0.96
538247--538360	26	4.4	25	67	19	65	61	1	0	35	1.12
538739--538834	35	2.6	36	86	6	131	32	14	14	38	1.87
539299--539858	109	5.3	105	82	7	589	21	21	25	31	1.98
539299--539858	206	2.7	205	81	9	651	21	21	25	31	1.98
539366--540192	324	2.6	312	79	10	879	22	21	24	32	1.98
539843--539874	16	2.0	16	93	0	55	18	9	31	40	1.83
539747--539979	121	1.9	122	92	0	396	22	18	24	33	1.96
539894--540193	98	3.0	97	77	8	357	22	21	22	33	1.97
539991--540187	105	1.9	106	84	1	270	22	22	23	31	1.98
540720--540866	65	2.3	65	95	0	258	38	11	19	30	1.88
540831--541241	37	11.9	37	67	18	242	37	12	20	28	1.90
540766--541223	102	4.5	102	93	0	763	37	12	20	29	1.89
541137--541241	36	2.9	36	89	1	147	40	11	23	24	1.88
542102--542152	22	2.3	22	96	0	93	25	11	27	35	1.91
542769--542847	14	5.8	14	73	21	78	0	13	6	79	0.91
542769--542848	28	2.9	28	73	17	87	0	13	7	78	0.95
542778--542839	19	3.2	20	82	15	76	0	14	4	80	0.87
547626--547663	16	2.4	16	82	4	51	63	0	5	31	1.17
547838--547868	15	2.1	15	93	0	53	64	0	0	35	0.94
548322--548417	35	2.6	36	86	6	131	32	14	14	38	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
549179--549221	21	2.0	21	81	0	50	30	30	25	13	1.94
549201--549352	67	2.2	68	89	3	227	27	28	26	17	1.97
549658--549729	29	2.5	29	95	0	126	40	9	11	38	1.74
549898--550201	149	2.0	149	98	0	590	27	16	20	36	1.94
550180--550224	23	2.0	23	81	0	54	20	22	28	28	1.98
556255--556297	21	2.0	21	81	0	50	30	30	25	13	1.94
556277--556413	67	2.1	67	91	1	222	28	26	27	17	1.98
556737--556808	29	2.5	29	95	0	126	40	9	11	38	1.74
556977--557280	149	2.0	149	99	0	599	27	16	20	35	1.94
557259--557303	23	2.0	23	86	0	63	20	24	28	26	1.99
557985--558185	95	2.1	96	83	3	253	27	21	14	35	1.93
559196--559262	29	2.3	29	92	0	107	29	17	14	37	1.91
560651--560709	22	2.7	22	100	0	118	25	16	23	33	1.96
561142--561240	52	1.9	52	93	4	173	29	8	18	44	1.78
562144--562257	58	2.0	56	89	3	174	41	6	14	38	1.70
562231--562333	33	3.2	32	82	10	111	43	0	12	42	1.49
562182--562463	144	2.0	144	95	2	505	42	3	12	42	1.58
562375--562449	32	2.2	34	86	13	111	46	1	9	42	1.44
565610--565775	55	3.0	55	100	0	332	27	10	7	54	1.61
566441--566490	21	2.4	21	77	12	57	42	10	14	34	1.78
566711--566767	20	2.9	19	78	2	60	57	3	1	36	1.26
568712--568755	5	8.8	5	100	0	88	0	38	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
569246--569386	64	2.2	63	80	7	151	32	17	23	26	1.97
569394--569431	20	1.9	20	94	0	67	31	23	23	21	1.98
570375--570439	31	2.1	31	82	5	78	21	18	23	36	1.95
570425--570496	29	2.4	30	83	2	83	20	15	27	36	1.93
572003--572042	21	1.9	21	94	0	71	40	10	22	27	1.86
573414--573554	64	2.2	63	81	7	160	31	18	24	25	1.98
573542--573599	20	2.6	22	89	10	84	31	20	22	25	1.98
574418--574447	15	2.0	15	100	0	60	26	13	26	33	1.93
574543--574637	31	3.1	31	82	8	97	22	18	24	34	1.96
574557--574637	30	2.7	30	84	5	101	23	18	25	32	1.97
577170--577263	31	3.1	30	86	4	116	29	28	25	15	1.96
579512--579562	21	2.4	21	84	12	61	68	1	7	21	1.25
581112--581318	106	1.9	107	90	0	326	21	19	25	34	1.96
581632--581824	67	2.8	67	81	3	215	38	11	21	28	1.89
581779--581929	36	4.4	35	92	4	215	31	11	18	38	1.86
581805--581929	36	3.6	36	95	3	220	30	10	17	41	1.83
581970--582084	37	3.1	36	86	3	167	39	11	20	29	1.87
582156--582224	36	1.9	36	91	5	113	44	14	17	23	1.85
582240--582492	37	7.4	37	67	21	140	37	11	20	30	1.89
582115--582390	100	2.7	101	93	2	448	37	11	19	30	1.88
582177--582560	166	2.3	166	90	4	592	36	11	20	31	1.89
582277--582456	66	2.8	65	90	5	276	35	12	21	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
582340--582581	102	2.3	105	87	3	348	36	12	20	30	1.89
583780--584129	183	1.9	183	95	0	637	30	21	20	27	1.98
587970--588020	21	2.4	21	84	12	61	68	1	7	21	1.25
592470--592500	2	15.5	2	100	0	62	48	0	0	51	1.00
602288--602446	44	3.6	44	78	8	189	27	25	20	27	1.99
602273--602435	87	1.9	87	90	2	265	23	25	20	29	1.99
603489--603513	12	2.1	12	100	0	50	32	20	32	16	1.94
603834--603872	2	20.0	2	94	5	71	51	0	0	48	1.00
610182--610218	17	2.1	18	90	5	58	51	5	0	43	1.24
616565--616595	2	15.5	2	100	0	62	48	0	0	51	1.00
618293--618355	23	3.0	20	71	15	63	52	15	4	26	1.63
618446--618499	29	1.9	27	92	3	81	53	11	12	22	1.70
623713--623755	18	2.4	18	84	0	50	58	18	9	13	1.62
623982--624011	10	3.0	10	95	0	51	26	10	20	43	1.83
628717--628911	43	4.5	44	70	12	145	25	17	30	26	1.98
628609--629205	125	4.7	126	82	6	585	26	17	27	28	1.98
629528--629593	23	3.0	23	78	10	84	21	33	27	18	1.96
629528--629614	44	2.0	43	84	6	113	22	34	26	16	1.95
639963--640066	42	2.5	42	85	1	129	32	15	16	35	1.90
641030--641113	43	2.0	43	95	0	150	41	22	16	19	1.90
641780--641870	3	30.3	3	100	0	182	67	0	0	32	0.91
642584--642615	14	2.3	14	100	0	64	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
650823--650871	22	2.3	22	92	3	82	20	38	24	16	1.92
651070--651094	10	2.5	10	100	0	50	72	20	8	0	1.10
656649--656728	23	3.7	22	80	6	74	26	31	22	20	1.98
656649--656709	23	2.7	23	87	2	79	22	31	22	22	1.99
658614--658648	18	1.9	18	88	11	54	25	0	17	57	1.40
660456--660502	18	2.6	18	82	0	67	27	44	0	27	1.55
664034--664083	19	2.5	20	87	6	66	52	4	0	44	1.20
664588--664612	3	8.3	3	100	0	50	68	0	0	32	0.90
664588--664634	18	2.9	16	84	12	60	70	0	2	27	0.99
664585--664710	23	5.6	23	69	21	70	73	0	4	21	1.07
664649--664721	24	2.8	26	80	14	80	79	1	6	12	0.99
664588--664712	17	6.9	18	70	20	66	73	0	4	20	1.06
664766--664803	4	9.8	4	83	16	53	73	0	2	23	0.95
666347--666714	83	4.4	82	79	4	326	26	17	22	33	1.96
666702--666827	34	3.8	33	84	5	157	31	7	18	42	1.77
666812--667243	36	12.2	36	78	14	409	39	14	19	27	1.90
666780--667215	73	6.2	67	74	15	191	39	13	19	27	1.89
666881--667243	73	5.1	72	78	10	404	40	14	19	26	1.89
667113--667213	21	5.4	20	63	26	60	39	11	21	26	1.88
666952--667211	138	1.9	140	85	4	366	40	13	18	26	1.88
668360--668545	95	2.0	94	88	5	277	31	18	17	32	1.94
671145--671201	4	14.8	4	79	20	68	73	0	1	24	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
675394--675445	19	2.8	17	75	13	50	63	0	3	32	1.12
676681--676780	18	5.6	18	83	10	116	7	23	0	70	1.12
677008--677082	39	1.9	39	88	0	114	22	18	36	22	1.95
677489--677540	28	2.0	27	85	11	72	32	19	3	44	1.69
678364--678404	2	20.5	2	100	0	82	48	0	0	51	1.00
684826--684876	22	2.3	23	89	3	77	43	13	9	33	1.77
684876--685688	56	14.5	56	73	13	402	38	15	11	34	1.84
685238--685347	57	1.9	57	85	3	150	40	13	9	36	1.76
685334--685385	26	2.0	26	100	0	104	38	7	19	34	1.80
685276--685427	82	1.8	83	84	4	209	38	11	13	36	1.81

Tables:   1   2   3   4   5   6   7   8   9