genome.fa.s7173.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007173.1 Hibiscus syriacus cultivar Beakdansim tig00018827_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1357898

Tables:   1   2   3   4   5   6   7   8   9   

This is table  6  of  9  ( 987 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
868630--868676	2	23.5	2	100	0	94	48	0	0	51	1.00
878806--879062	125	2.1	125	81	2	302	30	15	28	26	1.96
879874--880043	35	4.9	35	88	2	243	34	22	21	21	1.97
879874--880043	71	2.4	69	90	3	252	34	22	21	21	1.97
880372--880473	42	2.5	41	83	1	132	24	22	22	30	1.99
880049--881537	207	7.2	206	93	2	2398	31	16	20	31	1.95
881414--881507	42	2.2	42	96	0	170	22	22	22	32	1.98
894590--894615	9	2.9	9	100	0	52	7	23	0	69	1.14
897163--897202	17	2.3	18	87	12	66	55	10	12	22	1.67
900445--900738	54	5.4	54	88	1	428	28	18	18	34	1.95
900445--900736	162	1.8	162	90	3	471	29	18	18	33	1.95
907890--907944	23	2.5	23	85	5	78	29	18	16	36	1.92
908370--908411	18	2.2	20	84	16	54	21	0	9	69	1.17
910232--910267	12	2.8	13	87	8	56	47	8	5	38	1.57
910360--910403	20	2.2	20	88	4	63	36	4	4	54	1.41
916365--916604	54	4.4	54	90	2	374	31	19	16	32	1.94
919995--920036	21	2.0	22	85	4	59	47	0	4	47	1.23
923146--923199	25	2.2	25	86	6	74	24	5	7	62	1.42
924521--924578	29	2.0	29	93	0	98	55	1	13	29	1.49
926143--926186	20	2.2	21	88	8	65	77	2	13	6	1.07
932822--932890	33	2.1	34	84	10	90	26	0	10	63	1.25
932859--932987	65	2.0	65	89	6	199	31	0	11	56	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
932873--933014	65	2.2	65	84	5	180	28	0	14	55	1.45
933581--933622	18	2.4	17	88	4	57	21	4	0	73	1.01
936640--936671	17	1.9	16	93	6	55	25	0	0	75	0.81
938124--938272	76	2.0	75	85	7	203	30	1	9	58	1.38
938179--938241	32	2.0	32	84	12	85	28	0	7	63	1.22
938920--938968	19	2.6	18	81	9	62	20	4	2	73	1.10
943806--943871	17	3.5	18	78	13	62	74	0	3	22	0.96
943801--943877	32	2.5	32	81	12	90	74	0	3	22	0.98
944072--944128	24	2.3	24	77	19	64	68	0	1	29	1.00
943971--944353	188	2.0	192	97	2	738	61	3	9	25	1.42
947695--948237	101	5.4	101	79	7	514	34	11	15	38	1.84
954453--954488	2	19.0	2	88	11	58	50	0	0	50	1.00
955197--955249	27	2.0	26	92	7	90	20	37	18	22	1.94
966836--967045	113	1.9	113	92	0	357	30	22	15	31	1.95
967068--967369	110	2.8	108	86	7	407	30	22	18	27	1.98
967506--967538	3	11.3	3	87	6	50	27	0	0	72	0.85
967510--967544	12	2.9	12	91	0	52	22	0	2	74	0.95
967500--967538	15	2.7	15	84	4	53	28	0	0	71	0.86
970744--970808	24	2.7	24	86	6	78	21	26	15	36	1.93
970755--970808	24	2.2	24	93	3	90	20	24	16	38	1.92
976645--976700	21	2.7	21	97	2	105	28	8	23	39	1.85
979836--979869	12	2.7	13	86	9	52	44	8	5	41	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
988366--988423	23	2.7	20	78	17	71	29	18	17	34	1.94
989501--989529	15	1.9	15	100	0	58	34	6	31	27	1.83
993906--994411	188	2.7	188	85	2	642	33	17	8	40	1.79
1001626--1001804	40	4.5	40	84	0	216	32	25	18	24	1.97
1001953--1001995	22	2.0	22	90	0	68	34	11	13	39	1.82
1007346--1007377	13	2.5	13	94	0	55	71	0	3	25	1.00
1009410--1009464	6	9.2	6	78	11	51	65	0	1	32	1.03
1009410--1009473	30	2.1	32	85	11	89	67	0	1	31	1.00
1010841--1010921	12	6.3	14	75	24	81	60	0	0	39	0.97
1010842--1010921	5	15.2	5	87	12	108	60	0	0	40	0.97
1010928--1010981	29	2.0	29	89	10	87	50	7	0	42	1.30
1010954--1011005	22	2.3	23	81	15	65	46	5	1	46	1.38
1011094--1011140	22	2.2	22	92	3	78	46	12	0	40	1.42
1011115--1011169	28	2.0	28	82	7	67	40	7	3	49	1.48
1011937--1011983	11	4.7	10	78	17	53	70	0	0	29	0.88
1011940--1011973	5	6.6	5	86	6	50	67	0	0	32	0.91
1011930--1011983	21	2.7	20	80	11	65	70	0	0	29	0.88
1011928--1011986	26	2.4	23	81	13	64	69	0	0	30	0.89
1013254--1013392	3	44.0	3	72	19	81	57	2	0	39	1.16
1013253--1013462	7	30.1	7	74	16	145	54	3	1	40	1.27
1013253--1013392	26	5.3	26	80	18	139	57	2	0	40	1.16
1013271--1013444	2	93.5	2	67	28	84	54	4	1	40	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1013265--1013406	46	2.9	50	77	14	168	56	2	0	40	1.19
1013235--1013471	71	3.3	72	78	15	217	53	4	1	40	1.30
1013269--1013462	51	3.6	55	77	17	178	54	4	1	40	1.29
1013273--1013443	43	3.9	43	77	16	138	54	4	1	40	1.27
1016688--1016778	23	4.1	22	81	7	103	16	23	28	31	1.96
1016680--1016770	46	2.0	46	85	4	123	17	25	25	31	1.97
1017941--1017977	13	2.8	13	95	4	65	67	0	2	29	1.04
1018294--1018322	7	4.3	7	91	8	51	58	0	0	41	0.98
1019955--1020105	54	2.8	54	87	7	184	28	15	21	34	1.94
1020026--1020116	31	3.2	31	67	23	90	25	14	24	36	1.93
1020011--1020096	27	3.2	27	65	23	72	27	16	22	33	1.95
1019974--1020126	54	2.8	54	91	2	227	28	16	21	33	1.95
1021284--1021369	42	2.0	42	86	0	118	25	12	20	40	1.88
1029046--1029131	27	3.2	27	67	23	72	27	18	20	32	1.96
1029582--1029637	20	2.6	22	75	11	62	26	21	14	37	1.92
1029533--1029708	94	1.9	93	82	3	219	27	22	12	37	1.90
1030323--1030406	36	2.3	36	97	0	159	30	22	4	41	1.74
1030574--1030888	163	1.9	163	85	0	432	23	24	15	36	1.94
1033117--1033161	21	2.1	21	84	8	56	44	4	0	51	1.21
1039458--1039516	3	19.7	3	79	6	66	40	0	0	59	0.97
1039458--1039511	21	2.5	22	91	5	85	42	0	0	57	0.98
1039523--1039603	26	3.1	26	92	0	135	40	29	18	11	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1048267--1048348	21	3.8	20	77	15	67	24	36	24	14	1.93
1050632--1050683	13	3.7	13	72	18	50	40	13	3	42	1.62
1050624--1050683	30	2.0	30	100	0	120	36	13	3	46	1.60
1053696--1053772	21	3.6	22	77	16	63	14	16	11	57	1.66
1053717--1053772	7	7.9	7	74	18	53	12	17	10	58	1.61
1053706--1053781	37	2.1	36	85	2	98	13	17	10	59	1.61
1056033--1056060	2	14.0	2	100	0	56	50	0	0	50	1.00
1056356--1056425	17	4.1	17	75	12	63	77	0	20	2	0.90
1056388--1056430	17	2.5	17	88	0	59	76	0	13	9	1.01
1058660--1058884	115	2.0	114	90	0	360	33	14	20	31	1.93
1061379--1061420	22	1.9	22	95	0	75	30	11	14	42	1.81
1062138--1062508	184	2.0	186	94	1	647	31	14	14	39	1.86
1062449--1063085	76	8.4	76	97	0	1168	23	19	22	34	1.96
1063247--1063309	3	21.0	3	80	6	74	41	0	0	58	0.98
1063247--1063303	21	2.7	21	89	8	89	42	0	0	57	0.98
1063313--1063367	26	2.1	26	93	0	92	41	30	18	9	1.81
1069436--1069534	32	2.8	38	73	17	104	13	6	32	48	1.66
1072062--1072420	179	2.0	180	99	0	711	28	22	22	26	1.99
1074176--1074649	127	3.9	124	83	10	615	23	23	19	33	1.97
1074598--1074707	56	2.0	56	92	3	188	27	24	8	40	1.83
1074471--1074832	181	2.0	182	93	1	620	24	24	17	34	1.96
1074354--1074959	306	2.0	300	92	4	1004	23	23	18	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1074652--1075795	127	9.1	127	93	1	1933	21	23	21	33	1.97
1074652--1075795	376	3.0	377	94	1	1972	21	23	21	33	1.97
1075951--1076047	33	2.9	33	83	6	133	40	3	4	52	1.36
1076376--1076641	130	2.0	135	96	3	497	30	21	25	21	1.99
1076701--1076766	21	3.2	20	89	8	96	22	22	36	18	1.95
1078539--1078586	15	3.2	15	80	16	55	58	0	0	41	0.98
1078541--1078626	30	2.8	30	79	10	95	56	0	0	43	0.99
1081894--1082247	37	9.6	37	91	0	573	23	16	20	39	1.92
1082546--1082705	66	2.4	65	88	7	227	28	23	18	29	1.98
1088420--1088538	44	2.7	43	85	2	157	31	21	19	26	1.97

Tables:   1   2   3   4   5   6   7   8   9