Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007173.1 Hibiscus syriacus cultivar Beakdansim tig00018827_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1357898

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 987 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1323214--1323258
13
3.5
13
93
0
72
31
22
15
31
1.95
1323237--1323531
85
3.5
85
88
6
422
29
20
16
33
1.95
1323368--1323425
28
2.0
29
83
6
73
36
17
15
31
1.91
1323237--1323571
85
4.0
83
83
8
329
30
20
16
32
1.95
1323591--1323733
2
71.5
2
88
0
205
53
0
2
44
1.12
1329596--1329651
15
3.7
15
90
2
76
8
21
10
58
1.58
1340688--1340719
7
4.7
7
96
3
57
25
28
46
0
1.53
1341114--1341155
18
2.5
17
81
11
59
45
0
0
54
0.99
1341689--1341728
16
2.5
16
95
0
71
17
37
12
32
1.87
1342720--1342927
56
3.7
56
89
3
296
37
10
18
33
1.85
1343519--1343562
11
4.2
11
88
8
65
9
15
0
75
1.05
1343519--1343564
21
2.1
22
88
11
69
8
17
0
73
1.07
1344063--1344226
74
2.2
74
86
4
231
30
1
10
56
1.44
1344184--1344246
19
3.2
19
75
4
54
31
0
12
55
1.37
1344085--1344226
74
1.9
77
91
4
236
28
1
11
59
1.40
1344106--1344259
74
2.1
74
80
9
172
29
0
12
57
1.40
1344869--1344914
16
2.7
17
86
6
58
21
2
2
73
1.04
1346658--1346691
15
2.3
15
94
0
59
44
20
26
8
1.81
1348638--1348825
93
2.0
93
98
0
367
37
17
12
32
1.87
1350606--1350652
20
2.3
20
85
7
69
10
2
4
82
0.88
1352432--1352579
76
2.0
75
89
4
226
28
2
10
58
1.44
1353868--1353899
13
2.5
13
94
0
55
40
0
18
40
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1353909--1354197
34
8.2
34
77
12
255
45
3
5
44
1.46
1354021--1354047
13
2.1
13
100
0
54
37
7
7
48
1.59
1355455--1355489
2
17.5
2
100
0
70
48
0
0
51
1.00
1355512--1355587
25
3.2
24
76
16
86
14
7
1
76
1.07
1355536--1355577
22
1.9
22
90
9
68
16
11
0
71
1.14

Tables:   1   2   3   4   5   6   7   8   9

The End!