genome.fa.s761.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000761.1 Hibiscus syriacus cultivar Beakdansim tig00001478_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  5609167

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  23  of  23  ( 2686 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5510341--5511113	264	2.9	263	79	8	705	40	9	16	33	1.81
5512781--5513120	99	3.4	98	83	5	407	35	16	13	35	1.88
5518659--5518766	53	2.0	53	98	0	207	42	21	0	36	1.53
5518667--5518777	29	4.0	28	77	16	133	44	19	0	36	1.51
5520830--5520868	20	2.0	20	84	0	51	23	5	20	51	1.67
5527093--5527204	37	3.1	35	66	20	88	41	12	5	40	1.66
5527074--5527212	70	2.0	70	91	0	224	41	12	6	40	1.68
5527403--5527427	13	1.9	13	100	0	50	44	16	0	40	1.47
5535182--5535252	37	2.0	34	89	10	108	35	21	16	26	1.95
5543940--5543972	10	3.7	9	88	11	50	30	0	0	69	0.88
5544804--5544846	22	2.0	22	86	9	61	13	9	11	65	1.48
5545247--5545283	20	1.9	20	88	5	58	43	0	0	56	0.99
5547252--5547295	15	2.8	15	89	6	61	38	0	18	43	1.50
5547272--5547323	15	3.5	15	86	0	68	38	5	21	34	1.77
5547454--5547499	24	1.9	24	95	0	83	19	28	26	26	1.99
5547502--5547555	24	2.2	24	86	0	81	24	20	22	33	1.97
5556881--5557026	42	3.5	42	80	13	137	30	5	2	62	1.29
5557150--5557339	44	4.5	42	75	12	181	27	16	9	46	1.78
5557153--5557345	85	2.3	86	81	8	223	27	17	9	45	1.79
5566841--5566896	18	2.9	19	78	14	62	50	10	10	28	1.71
5574675--5574888	96	2.2	97	84	6	267	24	19	5	50	1.67
5574823--5574923	54	1.9	52	83	4	130	22	22	6	47	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5574675--5574946	96	2.8	97	82	8	238	24	19	6	49	1.71
5574870--5575083	44	4.9	43	74	7	175	28	17	7	45	1.77
5578044--5578087	19	2.3	19	88	0	61	56	2	4	36	1.32
5578134--5578171	20	1.9	20	84	10	51	57	0	10	31	1.32
5578215--5578244	3	10.0	3	100	0	60	66	0	0	33	0.92
5578264--5578319	28	2.0	27	86	3	76	66	1	7	25	1.27
5579573--5579776	83	2.5	83	84	0	266	27	21	17	33	1.96
5579569--5580385	243	3.4	242	84	3	959	25	19	21	33	1.97
5579624--5580381	323	2.3	322	85	3	986	25	19	22	33	1.97
5579624--5580385	80	9.4	80	84	3	875	25	19	21	33	1.97
5581588--5581791	98	2.1	98	97	0	381	32	19	15	31	1.93
5586579--5586635	2	28.5	2	100	0	114	50	0	0	49	1.00
5587477--5587698	64	3.5	64	84	5	238	33	20	19	27	1.96
5588448--5588670	103	2.2	103	100	0	446	25	13	25	36	1.91
5588682--5588744	23	2.7	23	92	0	99	19	28	26	25	1.98
5589655--5589687	13	2.5	13	95	0	57	39	9	18	33	1.82
5593191--5593220	13	2.4	13	94	5	53	50	6	10	33	1.62
5595506--5595585	23	3.6	22	77	13	83	27	22	25	25	2.00
5599369--5599411	21	2.0	22	86	13	63	34	6	4	53	1.49
5599370--5599421	21	2.5	20	82	17	54	34	7	3	53	1.48
5601312--5601468	65	2.4	64	79	8	185	27	15	24	33	1.95
5601436--5601517	34	2.4	34	93	0	137	25	10	29	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5602040--5602077	20	1.9	20	84	10	51	55	2	13	28	1.51
5607862--5607927	34	1.9	34	84	0	87	39	18	12	30	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23

The End!