genome.fa.s7768.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007768.1 Hibiscus syriacus cultivar Beakdansim tig00110044_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2539099

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1290 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2363463--2363523	31	2.0	30	83	3	77	31	0	9	59	1.30
2369651--2369695	19	2.4	19	100	0	90	17	31	20	31	1.96
2373088--2373128	20	2.0	20	90	0	64	17	26	39	17	1.91
2376372--2376418	20	2.3	20	100	0	94	10	12	42	34	1.78
2376504--2376542	20	2.0	20	84	0	51	17	28	33	20	1.96
2379781--2379839	31	1.9	31	92	0	100	40	6	10	42	1.65
2379864--2379906	22	2.0	22	95	0	77	51	16	0	32	1.45
2379866--2379914	22	2.2	22	85	3	62	55	16	0	28	1.42
2379923--2380044	26	4.6	26	66	22	83	54	16	0	29	1.43
2379869--2380096	80	2.9	80	94	1	397	52	15	0	32	1.47
2379854--2380207	52	6.6	54	77	14	349	51	14	0	33	1.44
2380077--2380117	21	2.0	21	90	9	66	48	14	0	36	1.44
2380079--2380125	21	2.2	21	81	11	51	53	14	0	31	1.42
2379949--2380385	189	2.3	189	90	6	708	51	12	0	35	1.42
2379854--2380233	58	7.0	56	75	13	278	52	14	0	32	1.45
2380134--2380287	80	1.9	82	94	5	276	51	15	0	32	1.44
2380218--2380385	54	3.1	55	91	3	263	50	9	0	39	1.35
2380267--2380309	22	2.0	22	100	0	86	51	13	0	34	1.42
2380269--2380317	22	2.2	22	88	3	71	55	14	0	30	1.40
2380286--2380370	33	2.4	34	86	7	109	49	7	0	43	1.29
2380312--2380385	15	4.5	15	75	21	67	51	2	0	45	1.15
2380912--2380989	21	3.5	22	73	8	68	25	21	23	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2383575--2383732	65	2.5	65	82	6	180	32	18	17	32	1.94
2386173--2386255	30	2.8	30	83	8	116	30	22	15	31	1.95
2389142--2389187	23	2.0	23	88	12	69	58	0	2	39	1.10
2392604--2392760	20	7.8	20	73	6	93	38	25	17	19	1.93
2392604--2392760	41	3.9	41	70	11	126	38	25	17	19	1.93
2392727--2392936	20	10.5	20	82	2	188	37	24	18	20	1.94
2393019--2393088	22	3.3	22	86	4	99	20	40	15	24	1.91
2393641--2393687	24	2.0	24	87	8	69	25	14	21	38	1.92
2393862--2393886	12	2.1	12	100	0	50	72	0	28	0	0.86
2396166--2396487	33	9.5	33	75	16	155	45	18	21	13	1.84
2396166--2396310	52	2.8	52	86	6	152	46	20	18	13	1.83
2396166--2396394	85	2.7	85	95	2	399	46	19	20	13	1.84
2396303--2396484	14	10.8	15	72	22	66	44	18	24	13	1.85
2396232--2396487	51	4.9	52	93	4	412	45	17	22	14	1.84
2396232--2396487	104	2.5	105	91	5	414	45	17	22	14	1.84
2396494--2396609	53	2.2	53	96	1	216	12	24	18	43	1.85
2396512--2396609	19	5.4	19	84	13	143	14	22	17	45	1.84
2396716--2396752	14	2.6	14	91	0	65	45	21	0	32	1.52
2398735--2398791	14	3.7	14	77	20	60	45	22	21	10	1.82
2398716--2398808	33	2.8	33	95	0	168	47	21	20	10	1.80
2398679--2398813	19	7.6	19	76	16	128	45	23	19	11	1.82
2398809--2398937	19	7.3	19	75	17	125	8	17	28	45	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2398809--2398900	33	2.8	33	93	3	150	7	18	28	45	1.76
2398985--2399267	93	3.1	93	98	0	550	45	19	12	22	1.83
2400975--2401064	14	5.7	14	70	23	63	43	22	24	10	1.83
2400967--2401074	33	3.3	33	96	0	198	46	19	24	10	1.80
2400989--2401050	19	3.5	19	75	20	71	43	24	22	9	1.83
2401256--2401310	22	2.5	22	81	0	74	20	16	40	23	1.91
2401457--2401650	20	9.6	20	79	5	203	19	20	24	35	1.95
2401459--2401630	60	2.8	60	84	0	236	20	19	25	34	1.96
2401456--2401771	60	5.2	60	77	8	232	20	18	25	36	1.95
2401617--2401714	20	4.8	20	77	3	79	21	18	23	36	1.95
2401617--2401773	61	2.6	60	80	7	176	19	17	25	38	1.93
2401617--2401773	41	3.9	41	70	14	110	19	17	25	38	1.93
2403814--2403844	4	7.8	4	92	0	53	25	3	22	48	1.66
2407355--2407386	16	1.9	17	93	6	57	46	0	0	53	1.00
2407560--2407593	13	2.6	13	95	0	59	38	8	0	52	1.33
2408106--2408170	2	32.5	2	100	0	130	50	0	0	49	1.00
2411724--2411797	29	2.6	29	100	0	148	27	47	16	9	1.77
2416450--2416811	93	3.9	93	87	3	503	29	23	16	31	1.96
2416450--2416811	189	1.9	186	87	5	532	29	23	16	31	1.96
2428378--2428460	33	2.5	33	96	0	148	28	10	7	53	1.62
2434057--2434089	2	16.5	2	100	0	66	48	0	0	51	1.00
2434867--2434988	60	2.1	59	84	7	158	41	11	9	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2434881--2435008	59	2.1	60	81	8	145	42	10	9	38	1.71
2441251--2441285	17	1.9	19	88	11	56	74	5	2	17	1.14
2446145--2446202	27	2.1	28	87	3	82	24	13	3	58	1.51
2453945--2454002	30	1.9	30	82	6	73	27	25	24	22	2.00
2454027--2454068	19	2.2	19	91	0	66	40	11	30	16	1.85
2454027--2454083	19	2.9	19	79	7	53	36	14	29	19	1.91
2460079--2460128	23	2.2	22	79	6	55	44	0	8	48	1.32
2481434--2481512	12	5.8	12	68	25	50	27	16	10	45	1.79
2481424--2481520	29	3.3	29	98	0	185	27	17	10	44	1.81
2481446--2481500	17	3.5	17	72	23	66	25	16	10	47	1.79
2482076--2482116	17	2.4	17	91	0	64	21	12	9	56	1.65
2484319--2484393	35	2.1	35	92	0	123	37	0	22	40	1.54
2487795--2487843	19	2.5	20	77	6	57	55	2	0	42	1.11
2509182--2509214	17	1.9	17	100	0	66	30	15	24	30	1.95
2510294--2510397	31	3.1	31	85	13	118	12	8	36	42	1.74
2510283--2510400	39	3.4	32	84	13	130	11	9	36	42	1.74
2517208--2517234	12	2.2	12	100	0	54	14	0	7	77	0.97
2517595--2517665	36	2.0	36	94	0	124	23	12	9	53	1.68
2523545--2523709	63	2.6	64	82	6	194	35	19	19	26	1.95
2524383--2524446	30	2.1	30	88	0	92	20	18	26	34	1.96
2527741--2527901	64	2.5	64	84	4	200	34	19	19	26	1.96
2528574--2528637	30	2.1	30	85	0	83	18	18	28	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2532289--2532313	12	2.1	12	100	0	50	20	16	24	40	1.91
2535110--2535159	22	2.1	25	85	10	70	50	18	2	30	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!