genome.fa.s7768.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007768.1 Hibiscus syriacus cultivar Beakdansim tig00110044_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2539099

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  1  of  11  ( 1290 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9755--9789	15	2.3	15	95	0	61	28	11	8	51	1.67
14218--14255	19	2.0	20	84	5	51	34	2	13	50	1.55
15334--15362	14	2.1	14	100	0	58	27	10	13	48	1.75
15581--15679	30	3.2	31	77	17	82	46	2	0	51	1.12
15610--15656	22	2.1	22	88	4	67	44	2	0	53	1.12
15834--15878	23	2.0	23	86	0	63	53	2	2	42	1.25
20616--20668	19	2.8	19	77	8	54	16	18	15	49	1.80
21716--21764	2	24.5	2	100	0	98	51	0	0	48	1.00
30513--30555	2	21.5	2	95	0	77	53	0	0	46	1.00
31952--32045	31	3.0	31	80	6	109	39	20	17	23	1.92
32702--32925	64	3.5	64	84	3	247	28	18	20	32	1.96
40242--40373	66	2.0	66	90	0	210	40	14	8	37	1.76
42300--42344	6	7.5	6	100	0	90	35	0	48	15	1.45
42728--42803	15	5.2	14	69	23	50	34	2	7	55	1.43
42782--42831	19	2.5	20	77	3	57	34	0	10	56	1.33
43418--43484	19	3.5	18	78	11	62	50	5	4	38	1.47
43420--43479	19	3.1	19	82	4	75	53	6	5	35	1.49
44194--44258	24	2.7	24	77	13	71	49	0	0	50	1.00
46600--46626	10	2.7	10	100	0	54	74	0	11	14	1.08
46703--46752	25	2.0	25	92	0	82	62	0	2	36	1.07
46713--46792	29	2.8	28	76	12	76	62	1	2	33	1.16
47321--47391	37	1.9	37	91	5	117	32	12	14	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47631--47807	76	2.3	76	80	5	189	28	14	14	42	1.85
47810--48157	39	9.0	39	92	1	497	28	17	17	35	1.93
48135--48256	30	3.8	30	74	17	102	33	18	12	36	1.88
48099--48360	66	3.9	67	83	5	285	28	19	13	38	1.90
49009--49303	44	6.7	43	72	6	180	30	20	19	29	1.97
49100--49300	88	2.3	88	81	1	233	31	22	19	26	1.98
49004--49606	132	4.7	132	74	8	488	32	21	18	28	1.96
49280--49339	30	2.0	30	100	0	120	36	20	23	20	1.95
49056--49557	250	2.0	250	80	3	555	31	21	18	28	1.97
49519--49649	44	3.0	44	87	0	190	36	20	13	29	1.91
49530--49678	44	3.4	44	82	2	174	36	21	14	27	1.93
51035--51085	16	3.2	15	75	20	50	17	3	9	68	1.33
51034--51076	16	2.5	17	81	11	52	20	2	9	67	1.30
52845--52978	69	1.9	69	95	0	241	29	11	13	45	1.79
54365--54414	23	2.2	23	92	0	82	38	8	22	32	1.83
54328--54490	87	1.9	87	94	0	290	41	11	14	33	1.81
54485--55212	200	3.6	196	82	6	788	29	16	14	39	1.88
57847--58337	251	2.0	250	87	2	718	30	16	15	37	1.89
61090--61808	201	3.6	201	93	0	1161	32	15	13	37	1.87
61090--61827	403	1.8	400	90	1	1129	32	15	14	37	1.88
63975--64016	19	2.2	19	91	0	66	19	30	9	40	1.83
64099--64131	15	2.2	15	100	0	66	12	63	6	18	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65713--65850	58	2.4	58	93	0	240	35	15	5	44	1.68
66261--66306	20	2.3	19	78	10	56	21	17	8	52	1.71
71065--71109	18	2.5	18	100	0	90	24	0	28	46	1.53
71801--71846	17	2.6	18	82	10	58	39	13	0	47	1.42
71847--71958	59	1.9	58	85	5	154	33	10	1	53	1.46
71833--71961	29	4.4	29	79	2	141	34	10	1	52	1.46
72026--72084	30	2.0	30	93	6	102	42	8	0	49	1.33
72101--72157	24	2.3	24	80	11	62	38	8	0	52	1.33
72186--72305	30	4.0	30	80	3	125	52	0	7	39	1.36
74342--74386	22	2.2	20	88	8	63	53	2	0	44	1.13
86194--86275	29	2.8	29	94	1	137	32	14	9	42	1.79
90963--91044	29	2.8	29	94	1	137	32	14	9	42	1.79
93858--94337	241	2.0	241	92	0	809	41	13	19	26	1.88
95279--95344	31	2.1	33	88	5	100	24	10	24	40	1.86
97824--97892	23	3.0	23	84	0	93	27	26	26	20	1.99
98837--98881	20	2.2	20	92	0	72	24	28	0	46	1.53
102584--102652	23	3.0	23	84	0	93	27	26	26	20	1.99
103592--103637	20	2.3	20	100	0	92	21	30	0	47	1.51
107752--107819	33	2.1	33	91	0	109	23	13	22	41	1.89
111921--111945	11	2.3	11	100	0	50	44	0	0	56	0.99
111872--111974	44	2.4	43	78	3	107	42	0	5	50	1.33
115617--115663	20	2.3	21	89	7	71	65	0	2	31	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115892--116371	84	5.7	84	75	8	424	24	20	24	30	1.99
116029--116329	165	1.8	164	80	6	367	24	20	25	29	1.99
115920--116371	249	1.8	249	88	3	705	24	20	24	30	1.99
116390--117464	105	10.2	105	96	0	1902	22	17	25	33	1.96
116390--117464	209	5.1	209	95	1	1891	22	17	25	33	1.96
121264--121333	36	1.9	36	82	5	88	70	0	2	27	1.02
122631--122677	20	2.3	21	89	7	71	65	0	2	31	1.04
127517--127556	21	2.0	20	85	5	53	65	2	5	27	1.27
127537--127574	16	2.4	16	82	4	51	63	0	5	31	1.17
127735--127818	11	7.3	11	71	19	55	59	2	3	34	1.28
128264--128359	35	2.6	36	85	6	122	33	14	13	38	1.85
128873--129764	109	8.6	107	76	12	614	21	21	24	32	1.97
129315--129794	105	4.8	98	77	8	464	20	21	24	33	1.97
128827--129799	203	4.7	204	82	7	1073	21	21	24	32	1.98
130189--130418	103	2.2	103	79	3	241	41	13	19	25	1.88
130324--130504	65	2.8	65	93	0	308	36	12	20	30	1.89
130389--130847	102	4.5	102	94	0	783	36	12	20	30	1.90
130289--130606	167	1.9	169	93	1	550	37	12	20	29	1.89
130760--130865	36	2.9	36	91	2	158	38	13	22	25	1.90
132364--132424	20	3.0	20	78	7	61	3	14	6	75	1.13
135758--135817	24	2.6	24	79	12	63	65	1	5	28	1.23
135789--135826	16	2.4	16	82	4	51	63	0	5	31	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135997--136080	11	7.3	11	74	19	64	59	1	3	35	1.22
136003--136099	24	3.9	25	69	21	62	59	1	2	37	1.16
138580--138627	15	3.4	15	77	13	57	56	0	2	41	1.11
139963--140037	3	25.0	3	90	5	107	61	0	0	38	0.96
140302--140380	36	2.2	36	93	0	131	21	18	10	49	1.77
140326--140987	113	5.9	113	89	3	978	32	18	12	36	1.89
141713--142016	83	3.5	83	91	6	475	37	20	14	27	1.92
143167--143221	15	3.7	15	79	16	69	0	16	0	83	0.64
154565--154612	15	3.4	15	77	13	57	56	0	2	41	1.11
154641--154687	22	2.1	23	80	11	62	70	4	0	25	1.05
155940--155964	2	12.5	2	100	0	50	48	0	0	52	1.00
155966--156013	3	16.0	3	91	0	78	62	0	0	37	0.95
161034--161074	8	5.2	8	82	5	57	34	0	29	36	1.58
161145--161645	128	3.9	128	98	0	950	23	25	18	32	1.97
162964--163071	34	3.2	34	86	0	153	37	3	3	54	1.36
163590--163660	21	3.4	21	84	7	81	22	26	30	19	1.98
165721--165815	50	1.9	50	93	4	165	15	31	33	18	1.93
166523--166579	2	28.5	2	100	0	114	50	0	0	49	1.00
180344--180387	13	3.4	13	93	0	70	31	20	15	31	1.94
180367--180527	85	1.9	84	89	5	252	31	19	17	31	1.95
194476--194500	6	4.2	6	100	0	50	16	0	68	16	1.22
195215--195267	21	2.5	21	81	0	61	20	24	18	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195257--195343	20	4.3	20	80	11	106	37	20	19	21	1.94
195257--195343	41	2.2	40	89	2	129	37	20	19	21	1.94
195272--195353	20	4.1	20	78	10	78	36	19	20	23	1.95
196200--196253	24	2.2	24	93	0	90	20	18	20	40	1.91
198679--198765	20	4.3	20	83	2	113	35	21	21	20	1.96
198742--198833	33	2.7	33	86	3	112	43	19	21	15	1.87
198771--198834	34	1.9	33	96	3	119	43	18	23	14	1.86
198977--199013	14	2.6	14	86	0	56	48	21	0	29	1.50
200364--200471	42	2.6	42	77	5	112	22	18	37	21	1.94
200952--201035	33	2.5	33	80	1	96	48	22	17	10	1.78

Tables:   1   2   3   4   5   6   7   8   9   10   11