genome.fa.s7768.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007768.1 Hibiscus syriacus cultivar Beakdansim tig00110044_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2539099

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1290 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
201022--201088	20	3.3	20	89	0	98	38	22	17	20	1.93
201135--201292	20	8.5	20	77	19	137	17	18	21	42	1.89
201176--201269	33	2.8	33	80	3	107	13	18	22	45	1.84
203156--203210	20	2.8	20	85	0	74	49	21	16	12	1.79
203193--203250	20	2.9	20	94	0	107	31	24	20	24	1.98
203601--203688	22	4.0	22	90	0	140	19	15	39	25	1.91
203601--203698	44	2.2	44	87	0	142	18	17	39	24	1.91
203884--203955	20	3.5	20	84	3	108	20	22	19	37	1.94
203882--203970	41	2.2	41	87	0	133	26	20	19	33	1.96
203945--204019	21	3.6	21	81	3	89	34	18	24	22	1.96
203925--204017	20	4.6	20	80	5	71	31	19	23	25	1.98
207893--207955	30	2.1	30	93	0	108	39	22	14	23	1.91
219956--220107	30	5.1	30	79	3	162	18	23	28	29	1.98
219956--220107	60	2.5	60	83	0	196	18	23	28	29	1.98
226023--226117	29	3.3	29	74	11	113	17	3	24	54	1.57
234868--234920	15	3.5	15	92	2	79	35	22	5	35	1.78
239503--239536	7	4.9	7	92	0	59	38	29	17	14	1.90
239503--239539	14	2.6	14	95	0	65	35	29	18	16	1.93
239549--239577	14	2.1	14	100	0	58	6	20	51	20	1.70
239572--239670	9	10.3	9	76	12	90	28	28	27	16	1.97
239578--239671	19	4.8	19	80	8	109	28	28	25	17	1.97
243904--243951	13	3.8	13	75	5	53	20	43	16	18	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
243929--243964	18	2.0	18	94	0	63	19	47	22	11	1.80
246278--246368	24	3.8	24	82	2	112	25	17	20	36	1.94
246581--246606	2	13.0	2	100	0	52	50	0	0	50	1.00
250167--250210	19	2.3	19	88	7	63	29	31	25	13	1.94
250167--250210	10	4.7	9	83	10	61	29	31	25	13	1.94
251066--251223	40	4.0	40	95	4	286	40	10	4	44	1.58
251066--251223	79	2.0	80	95	4	286	40	10	4	44	1.58
251404--251446	18	2.3	19	80	11	54	62	2	2	32	1.20
259763--259843	42	1.9	42	85	5	110	30	16	13	39	1.87
259805--259898	29	3.2	29	98	0	179	38	15	10	35	1.83
266136--266170	18	1.9	18	94	0	61	40	2	5	51	1.40
266785--266828	21	2.1	21	86	0	61	54	2	6	36	1.40
272065--272171	53	2.0	53	98	0	205	27	14	20	37	1.92
273727--273754	14	2.0	14	100	0	56	21	7	7	64	1.43
279435--279491	28	2.1	27	86	3	78	45	5	3	45	1.43
279574--279630	29	2.0	29	89	0	87	38	10	8	42	1.71
280383--280526	60	2.4	58	80	6	173	32	13	18	34	1.91
280383--280564	59	3.1	58	76	5	177	36	13	15	34	1.87
281390--281547	21	7.8	20	72	7	86	38	25	17	18	1.92
281514--281707	20	9.6	20	81	5	212	35	25	19	19	1.95
281514--281707	60	3.2	60	82	0	244	35	25	19	19	1.95
282068--282136	31	2.2	33	86	5	97	11	21	18	47	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
282216--282288	21	3.5	21	81	3	103	45	16	23	15	1.85
282215--282292	41	1.9	41	100	0	156	44	15	24	15	1.85
282276--282332	14	3.7	14	70	20	51	45	22	22	8	1.80
282269--282348	33	2.4	33	93	0	133	48	22	20	8	1.76
282344--282411	19	3.8	19	75	18	83	10	23	20	45	1.81
282366--282436	14	4.7	14	77	16	79	8	23	22	45	1.80
282349--282422	33	2.2	33	97	0	139	9	21	21	47	1.79
284142--284610	93	5.1	93	99	0	922	21	12	19	46	1.83
284658--284786	19	7.3	19	73	17	116	46	28	16	8	1.76
284694--284786	33	2.8	32	90	4	141	47	27	17	7	1.74
284782--284914	19	7.5	19	75	16	124	10	19	23	46	1.81
284804--284860	14	3.7	14	77	20	60	10	21	22	45	1.82
284787--284879	33	2.8	33	95	0	168	10	20	21	47	1.80
286842--286877	14	2.6	14	95	0	63	33	0	22	44	1.53
286984--287081	19	5.4	19	84	13	143	45	17	22	14	1.84
286984--287100	53	2.2	53	98	1	227	44	17	23	13	1.85
287090--287292	19	11.7	19	74	20	203	14	21	18	45	1.85
287090--287264	52	3.3	52	97	0	323	14	22	17	45	1.85
287096--287306	33	6.2	33	76	14	223	13	21	18	45	1.84
289588--289612	12	2.1	12	100	0	50	0	28	0	72	0.86
289787--289833	24	2.0	24	87	8	69	38	21	14	25	1.92
290516--290785	20	13.5	20	87	1	272	20	18	24	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290772--290854	21	4.0	21	73	6	78	25	16	24	33	1.96
290752--290850	42	2.4	43	77	11	100	21	18	23	37	1.94
297980--298005	2	13.0	2	100	0	52	50	0	0	50	1.00
298280--298331	14	3.7	14	84	0	50	44	19	0	36	1.51
301844--301895	26	2.0	26	96	0	95	32	3	25	38	1.74
307577--307616	19	2.0	20	85	4	55	27	10	5	57	1.52
317195--317234	20	2.0	21	90	5	64	60	15	5	20	1.53
322516--322561	25	1.9	24	82	8	58	23	17	8	50	1.74
329973--330015	3	14.3	3	100	0	86	34	0	0	65	0.93
330574--330646	32	2.3	32	100	0	146	27	10	2	58	1.45
330737--330785	21	2.4	20	75	3	53	55	4	4	36	1.38
332670--332709	21	2.0	20	90	5	62	22	10	15	52	1.71
332709--332762	27	2.0	27	100	0	108	48	7	7	37	1.59
338515--338590	38	2.0	38	86	0	107	56	10	1	31	1.41
338585--338645	28	2.2	28	85	5	79	59	8	4	27	1.47
347410--347508	31	3.2	31	97	0	180	30	9	10	50	1.67
347699--347744	23	2.0	24	82	4	58	52	0	2	45	1.13
348858--348886	3	9.7	3	100	0	58	0	34	0	65	0.93
350047--350093	16	2.9	16	75	12	51	48	25	12	12	1.77
350472--350511	16	2.4	17	87	8	64	37	40	12	10	1.77
351249--351294	19	2.4	19	82	7	58	56	4	4	34	1.39
353902--353951	25	2.0	25	88	0	73	50	2	12	36	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362237--362270	11	3.1	11	86	0	50	61	20	0	17	1.34
369894--369926	16	2.0	17	88	5	50	39	0	0	60	0.97
383576--383623	15	3.1	16	74	17	55	43	0	0	56	0.99
384283--384315	17	1.9	17	93	0	57	42	0	9	48	1.35
386103--386139	2	18.5	2	100	0	74	48	0	0	51	1.00
392021--392547	210	2.5	211	93	2	878	51	7	11	28	1.67
392857--393065	2	103.0	2	68	16	110	46	3	4	45	1.39
392865--393065	11	18.9	10	67	19	52	46	3	4	45	1.40
392868--393188	42	7.5	42	79	8	215	45	5	5	44	1.49
393001--393065	31	2.1	30	94	2	112	44	4	3	47	1.39
393038--393085	20	2.5	20	89	3	71	45	10	4	39	1.58
393084--393142	31	1.9	31	89	0	91	45	6	6	40	1.57
393209--393264	22	2.7	22	81	10	64	42	1	5	50	1.35
393801--393828	14	2.0	14	100	0	56	21	42	28	7	1.79
393915--393987	33	2.3	33	88	4	105	9	38	27	24	1.86
401024--401083	21	2.9	21	92	0	102	25	21	28	25	1.99
404472--404523	26	2.0	26	88	3	79	25	11	0	63	1.28
404757--404798	13	3.3	13	86	3	59	40	2	0	57	1.12
404773--404853	31	2.7	30	78	14	87	35	6	1	56	1.32
414217--414277	16	3.8	16	91	0	95	54	21	13	11	1.70
414496--414583	23	3.8	23	90	0	131	25	20	23	30	1.98
414513--414575	12	5.4	12	73	21	62	23	22	22	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414497--414583	11	7.6	11	68	7	57	25	20	22	31	1.98
420919--420972	25	2.1	26	83	10	67	50	3	3	42	1.38
422839--422869	12	2.6	12	94	0	53	32	6	0	61	1.21
423744--423910	30	5.5	30	78	6	158	20	13	10	55	1.67
423744--423903	60	2.7	60	82	7	191	20	14	9	56	1.65
433164--433221	29	2.0	29	86	0	80	13	34	27	24	1.93
433258--433310	23	2.5	21	81	9	63	24	30	33	11	1.90
433265--433345	33	2.5	33	87	0	108	27	25	37	9	1.88
433362--433417	29	1.9	29	89	7	87	23	30	33	12	1.92
434797--434865	33	2.1	33	81	5	77	37	7	17	37	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11