genome.fa.s7768.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007768.1 Hibiscus syriacus cultivar Beakdansim tig00110044_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2539099

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  5  of  11  ( 1290 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
954647--954715	31	2.2	31	89	0	102	44	11	7	36	1.68
955343--955392	4	12.5	4	95	0	91	26	2	24	48	1.62
955641--955676	4	9.0	4	87	0	54	22	0	22	55	1.44
956755--956794	21	2.0	21	85	14	57	67	5	5	22	1.30
960183--960207	4	6.2	4	100	0	50	52	24	0	24	1.48
960287--960332	18	2.5	19	80	16	53	41	17	0	41	1.49
960437--960494	23	2.5	23	88	0	89	27	27	25	18	1.98
965411--965486	23	3.3	23	90	0	116	26	25	26	22	2.00
970207--970267	21	3.2	20	65	29	53	31	6	21	40	1.78
970199--970307	35	3.0	36	90	5	166	29	5	21	44	1.74
974843--974903	21	3.2	21	65	29	64	31	4	21	42	1.74
974835--974943	35	3.0	36	93	5	184	29	5	20	44	1.73
976180--976215	4	9.0	4	87	0	54	27	2	22	47	1.65
977532--977595	32	2.0	32	87	0	92	32	17	15	34	1.91
978200--978264	15	4.4	14	72	20	53	67	4	1	26	1.18
978048--978521	250	1.9	248	99	0	930	50	9	7	33	1.63
978450--978515	15	4.5	14	73	19	55	68	4	1	25	1.18
978720--979088	20	18.5	20	84	4	449	34	26	18	20	1.95
979771--979817	24	2.0	24	87	8	69	25	14	21	38	1.92
982299--982605	19	17.4	19	79	16	367	47	17	20	14	1.82
982327--982605	52	5.2	52	92	4	379	47	16	21	14	1.82
982366--982605	71	3.4	71	86	11	373	47	17	20	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
982299--982643	142	2.5	138	89	6	509	46	17	20	14	1.84
982299--982643	71	4.9	70	77	15	331	46	17	20	14	1.84
982634--982735	19	5.6	19	85	12	151	14	23	17	44	1.86
982842--982878	14	2.6	14	91	0	65	45	21	0	32	1.52
984837--984893	14	3.7	14	77	20	60	45	22	21	10	1.82
984818--984910	33	2.8	33	95	0	168	47	21	20	10	1.80
984781--984915	19	7.6	19	76	16	128	45	23	19	11	1.82
984911--985039	19	7.3	19	75	17	125	8	17	28	45	1.77
984911--985002	33	2.8	33	93	3	150	7	18	28	45	1.76
985083--985740	93	7.1	93	99	0	1293	46	18	12	22	1.83
985083--985740	185	3.5	186	99	0	1293	46	18	12	22	1.83
985083--985740	278	2.4	278	99	0	1307	46	18	12	22	1.83
987446--987502	14	3.7	14	79	20	69	42	22	26	8	1.83
987438--987545	33	3.3	33	90	0	162	46	19	24	10	1.80
987727--987781	22	2.5	22	81	0	74	20	16	40	23	1.91
987927--988119	20	9.6	20	82	5	219	19	19	25	35	1.95
987927--988119	60	3.2	60	83	0	251	19	19	25	35	1.95
988175--988224	20	2.5	20	93	0	82	24	14	22	40	1.90
988410--988474	15	4.4	14	72	20	53	67	4	1	26	1.18
991088--991157	31	2.3	30	78	11	72	38	8	8	44	1.66
992172--992207	2	18.0	2	100	0	72	0	50	0	50	1.00
993539--993566	14	2.0	14	100	0	56	28	14	28	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
996433--996498	33	2.0	34	96	3	125	68	0	19	12	1.21
996433--996485	17	3.2	17	74	15	65	64	0	22	13	1.28
1001671--1001803	60	2.2	59	86	6	178	33	17	16	32	1.92
1008155--1008408	108	2.3	105	76	12	248	43	4	7	44	1.52
1008270--1008395	38	3.4	38	78	11	111	47	4	4	42	1.45
1008206--1008422	70	3.1	69	74	12	201	47	3	6	42	1.47
1009713--1009753	19	2.1	19	86	4	55	24	0	0	75	0.80
1009902--1009931	13	2.3	13	94	0	51	33	3	0	63	1.11
1014977--1015125	74	2.0	74	86	0	208	26	24	20	28	1.99
1015051--1015621	165	3.5	164	88	0	845	29	23	20	26	1.99
1016403--1016534	35	3.7	35	75	17	119	47	3	5	43	1.41
1016320--1016544	38	6.0	37	72	14	151	45	3	6	45	1.44
1017877--1017917	19	2.1	20	90	4	66	26	0	0	73	0.84
1018069--1018098	13	2.3	13	100	0	60	33	0	0	66	0.92
1019103--1019235	60	2.2	60	83	12	159	30	23	6	39	1.81
1022997--1023043	21	2.2	21	77	7	51	63	0	2	34	1.06
1032833--1032901	21	3.3	21	77	6	68	23	57	1	17	1.47
1032842--1032905	21	3.1	20	79	4	74	21	59	1	17	1.46
1032851--1032962	24	4.8	24	74	10	88	24	58	0	16	1.45
1033913--1033937	10	2.5	10	100	0	50	84	0	16	0	0.63
1041267--1041295	14	2.1	14	100	0	58	20	44	27	6	1.77
1041311--1041373	33	1.9	33	93	0	108	25	23	39	11	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1041391--1041446	14	4.0	14	100	0	112	7	28	42	21	1.79
1045089--1045127	20	1.9	21	89	5	62	7	25	41	25	1.82
1045090--1045170	20	3.8	20	72	13	56	14	25	34	24	1.94
1053585--1053629	21	2.1	21	83	0	54	33	28	22	15	1.95
1054279--1054393	59	2.0	58	82	5	142	40	10	20	27	1.85
1054512--1054636	31	4.0	31	94	2	207	20	19	23	37	1.94
1055499--1055546	21	2.3	21	92	0	78	45	6	22	25	1.75
1058124--1058168	21	2.1	21	87	0	63	31	28	24	15	1.96
1058744--1058768	13	1.9	13	100	0	50	56	0	16	28	1.41
1058818--1058932	59	2.0	58	82	5	142	40	10	20	27	1.85
1059051--1059175	31	4.0	31	93	2	198	20	18	23	38	1.93
1061581--1061949	20	18.5	20	84	5	451	34	26	18	20	1.96
1062632--1062678	24	2.0	24	87	8	69	25	14	21	38	1.92
1062853--1062877	12	2.1	12	100	0	50	72	0	28	0	0.86
1065161--1065453	19	16.4	19	83	14	392	47	18	20	14	1.83
1065189--1065475	52	5.4	55	90	8	356	46	17	21	14	1.83
1065161--1065475	128	2.6	128	88	7	462	46	18	20	14	1.83
1065482--1065583	19	5.6	19	85	12	151	14	23	17	44	1.86
1065690--1065726	14	2.6	14	91	0	65	45	21	0	32	1.52
1067628--1067693	19	3.4	20	87	6	91	45	27	16	10	1.80
1067665--1067757	33	2.8	33	91	0	159	47	20	20	11	1.81
1067698--1067762	19	3.7	19	76	19	68	46	18	21	13	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1067684--1067740	14	3.7	14	72	20	51	45	21	21	12	1.83
1067758--1067886	19	7.3	19	75	17	125	8	17	28	45	1.77
1067758--1067849	33	2.8	33	93	3	150	7	18	28	45	1.76
1067930--1068216	93	3.1	93	97	1	549	46	18	12	22	1.82
1069923--1070012	14	5.7	14	74	23	81	42	23	25	8	1.83
1069915--1070029	33	3.5	33	95	0	212	45	20	24	9	1.81
1069922--1070034	19	6.8	18	72	23	88	43	22	24	9	1.83
1070046--1070100	14	3.6	14	73	21	56	9	25	23	41	1.83
1070030--1070100	33	2.2	33	94	0	124	8	22	25	43	1.81
1070041--1070122	33	2.5	33	89	2	119	9	25	21	42	1.84
1070053--1070141	20	4.8	20	72	19	75	12	24	19	43	1.85
1070221--1070291	33	2.2	33	92	0	115	47	18	22	11	1.80
1070473--1070527	22	2.5	22	81	0	74	20	16	40	23	1.91
1070673--1070865	20	9.6	20	82	5	219	19	19	25	35	1.95
1070673--1070865	60	3.2	60	83	0	251	19	19	25	35	1.95
1070921--1070972	20	2.6	20	96	0	95	21	13	26	38	1.90
1078661--1078693	2	16.5	2	100	0	66	51	0	0	48	1.00
1086193--1086234	18	2.4	18	84	4	59	33	4	2	59	1.31
1088917--1088968	26	2.0	26	100	0	104	34	11	0	53	1.37
1088917--1088985	26	2.6	26	88	9	86	34	13	0	52	1.40
1089533--1089983	224	2.0	223	90	2	699	21	11	17	48	1.79
1091182--1091239	28	2.1	28	84	9	75	24	13	12	50	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1097647--1097709	31	2.1	31	81	3	74	55	3	11	30	1.50
1100346--1100382	6	6.2	6	100	0	74	16	67	0	16	1.23
1105181--1105229	22	2.2	22	85	7	64	10	36	18	34	1.85
1106708--1107784	154	7.0	154	99	0	2147	46	17	9	26	1.79
1112234--1112259	3	8.7	3	100	0	52	0	0	30	69	0.89
1119450--1119528	35	2.3	35	88	0	113	24	8	24	43	1.82
1122782--1122817	4	9.0	4	93	0	63	47	25	2	25	1.65
1125673--1125724	18	2.8	18	74	8	52	32	5	3	57	1.40
1125756--1125867	59	1.9	59	83	9	147	37	13	12	36	1.82
1127665--1127741	37	2.1	37	85	4	102	48	1	3	46	1.28

Tables:   1   2   3   4   5   6   7   8   9   10   11