genome.fa.s7790.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007790.1 Hibiscus syriacus cultivar Beakdansim tig00110076_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2956777

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1250 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2856557--2856719	58	2.8	58	79	0	175	27	5	25	41	1.77
2856562--2856737	29	6.2	29	78	2	115	29	5	23	41	1.77
2856768--2856821	10	4.9	11	78	15	58	22	27	22	27	1.99
2856768--2856821	22	2.5	22	100	0	108	22	27	22	27	1.99
2863782--2863837	19	2.9	18	82	12	67	17	21	28	32	1.96
2863782--2863830	10	4.8	11	83	16	61	18	20	26	34	1.95
2863783--2863837	9	5.6	10	83	12	69	16	21	29	32	1.95
2863848--2863899	17	3.0	17	91	2	77	17	44	21	17	1.87
2863900--2864060	28	5.7	28	73	4	126	27	6	24	40	1.81
2863900--2864060	57	2.8	56	76	6	155	27	6	24	40	1.81
2863942--2864085	29	5.1	27	74	9	90	32	6	20	40	1.78
2867470--2867546	31	2.6	29	81	8	84	40	5	2	51	1.38
2871848--2871956	24	4.5	24	79	6	87	18	9	14	57	1.63
2876561--2876640	24	3.3	24	78	0	79	20	11	17	51	1.75
2882869--2882908	20	2.0	20	85	4	55	50	5	2	42	1.37
2886867--2887928	523	2.0	525	93	2	1833	24	14	16	44	1.85
2889221--2889373	65	2.4	64	83	5	175	29	22	18	29	1.97
2887712--2889419	851	2.0	850	98	0	3274	33	13	14	37	1.86
2892417--2892456	18	2.2	18	90	0	62	52	0	2	45	1.14
2892946--2893000	30	1.9	30	82	10	71	54	5	0	40	1.23
2895347--2895563	43	5.0	43	91	3	330	31	23	26	17	1.97
2895347--2895563	86	2.5	86	93	0	371	31	23	26	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2902007--2902054	19	2.5	19	83	6	62	52	0	2	45	1.12
2902044--2902079	2	18.0	2	94	0	63	47	0	0	52	1.00
2905016--2905053	18	2.0	20	85	14	55	60	2	2	34	1.24
2905489--2905526	20	1.9	20	84	10	51	52	2	2	42	1.29
2908928--2909021	24	3.9	24	77	5	109	22	11	15	50	1.77
2912147--2912191	22	2.2	20	84	8	54	46	4	2	46	1.35
2914846--2914913	28	2.4	29	80	11	79	42	2	1	52	1.25
2919747--2919781	13	2.7	13	86	13	54	37	8	8	45	1.65
2920126--2920274	65	2.3	64	84	3	183	31	22	16	29	1.96
2923897--2923987	21	4.3	21	80	16	109	51	1	3	43	1.25
2923855--2923987	42	3.3	41	72	18	120	50	1	3	44	1.29
2930328--2930354	2	13.5	2	100	0	54	51	0	0	48	1.00
2932225--2932262	20	1.9	20	84	10	51	52	2	2	42	1.29
2935655--2935693	12	3.2	12	81	0	51	20	12	17	48	1.80
2935653--2935760	24	4.5	24	78	9	112	21	12	15	50	1.78
2935653--2935760	48	2.2	48	87	6	148	21	12	15	50	1.78
2938655--2938712	18	3.2	18	75	20	57	46	1	3	48	1.29
2938919--2938963	22	2.2	20	84	8	54	46	4	2	46	1.35
2940048--2940078	2	15.5	2	100	0	62	51	0	0	48	1.00
2941887--2941958	31	2.3	31	81	13	85	41	2	2	52	1.30
2946590--2946630	14	2.9	14	96	0	73	34	0	9	56	1.32
2946761--2946809	20	2.3	22	79	17	66	28	0	44	26	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2946813--2946847	13	2.7	13	86	13	54	37	8	8	45	1.65
2947198--2947340	65	2.2	65	81	3	155	30	21	18	29	1.97
2949035--2949064	2	15.0	2	100	0	60	50	0	0	50	1.00
2954196--2954242	20	2.3	21	78	10	53	40	6	10	42	1.65
2956238--2956269	2	16.0	2	100	0	64	50	0	0	50	1.00
2956684--2956732	25	1.9	26	83	4	64	34	4	6	55	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!