genome.fa.s7790.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007790.1 Hibiscus syriacus cultivar Beakdansim tig00110076_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2956777

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1250 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
498611--499179	53	10.6	53	84	2	670	31	20	25	22	1.98
498611--499287	106	6.5	106	80	6	716	31	20	25	22	1.98
498611--499288	159	4.3	159	80	5	718	31	20	25	22	1.98
499142--499218	39	2.0	39	86	0	109	27	19	22	31	1.98
499461--499525	3	21.7	3	87	6	96	38	0	0	61	0.96
500755--500793	18	2.2	18	100	0	78	20	0	30	48	1.50
504207--504266	3	20.0	3	92	0	75	58	0	0	41	0.98
504513--504578	36	1.9	35	84	9	91	22	22	10	43	1.84
504477--504707	124	1.9	121	85	7	326	25	19	15	40	1.90
504615--505291	113	6.0	113	88	2	815	31	17	14	36	1.90
504615--505278	225	2.9	224	87	2	875	31	18	14	36	1.90
504615--505291	338	2.0	339	84	2	885	31	17	14	36	1.90
506003--506417	94	4.7	87	87	6	488	37	21	13	27	1.91
506101--506419	177	1.9	166	89	7	494	37	21	13	27	1.91
506195--506421	83	2.7	84	93	2	395	38	22	13	25	1.91
507458--507529	8	8.6	9	82	11	75	0	19	0	80	0.71
507487--507535	15	3.4	14	76	18	55	0	16	0	83	0.64
507459--507540	32	2.7	31	87	9	109	0	19	0	80	0.71
507462--507529	24	2.9	23	82	12	93	0	19	0	80	0.70
507462--507537	24	3.2	23	78	15	84	0	19	0	80	0.72
514720--514751	15	2.1	15	94	0	55	46	9	18	25	1.79
517928--518000	28	2.6	29	78	6	78	61	0	6	31	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
518638--518686	22	2.2	23	85	10	66	57	0	4	38	1.18
520113--520169	3	19.0	3	88	0	69	57	1	0	40	1.09
520113--520169	15	3.8	15	83	0	78	57	1	0	40	1.09
521564--521619	26	2.2	26	93	0	94	26	21	16	35	1.94
525611--525663	12	4.1	13	84	13	65	66	3	0	30	1.10
528425--528467	22	2.0	22	90	0	68	27	9	20	41	1.83
529143--529185	17	2.5	17	92	0	68	27	11	23	37	1.89
534165--534649	241	2.0	241	99	0	952	28	17	19	33	1.95
542929--543136	65	3.2	64	74	13	185	26	17	23	31	1.97
545790--545870	23	3.6	22	75	6	83	24	23	25	25	2.00
551210--551264	21	2.6	21	97	0	101	21	30	21	25	1.98
551303--551447	64	2.2	65	80	8	163	29	17	22	31	1.96
551322--551468	65	2.3	65	83	7	174	28	16	22	32	1.95
563777--563821	23	1.9	24	90	4	74	42	13	15	28	1.85
567359--567410	20	2.6	19	73	8	50	38	19	17	25	1.93
589349--589387	21	1.9	20	84	5	51	25	15	20	38	1.92
599495--599997	54	9.3	54	80	2	483	29	15	18	36	1.92
599508--600002	162	3.1	160	80	6	552	29	15	18	36	1.91
600337--600379	22	2.0	22	90	0	68	25	16	16	41	1.88
605189--605913	54	13.4	54	87	0	912	26	17	21	34	1.95
607184--607379	45	4.4	45	85	0	239	28	21	9	39	1.85
608005--608057	20	2.6	21	85	5	65	33	22	15	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
615545--615587	23	1.9	23	85	4	61	20	6	2	69	1.23
617769--617803	17	2.1	17	100	0	70	40	28	31	0	1.57
621014--621061	22	2.2	22	100	0	96	16	20	27	35	1.94
632901--633055	77	2.0	79	89	5	244	38	12	5	43	1.66
634440--634633	98	2.0	98	86	4	275	36	19	14	29	1.91
634655--634848	98	2.0	98	91	0	316	37	20	14	27	1.92
634426--635202	215	3.5	215	83	6	916	37	19	14	28	1.92
634753--635227	117	4.1	116	82	6	505	36	19	15	28	1.92
636596--636646	20	2.5	20	84	6	59	39	27	1	31	1.68
636608--636647	20	2.0	21	90	5	64	40	25	0	35	1.56
637799--637905	30	3.7	29	71	13	85	28	16	9	45	1.78
638035--638079	22	2.0	22	87	8	65	37	4	13	44	1.64
638249--638372	39	3.2	39	86	4	153	25	16	26	32	1.96
640250--640319	30	2.3	30	85	7	88	41	10	22	25	1.85
642560--642604	22	2.0	22	87	8	65	35	4	11	48	1.59
656967--657004	18	2.1	18	85	9	51	18	15	28	36	1.92
657669--657757	36	2.5	36	94	0	151	22	23	13	40	1.89
657690--657766	36	2.3	32	86	10	102	20	19	15	44	1.87
657818--657901	20	4.2	20	83	6	107	33	21	20	25	1.97
657818--657901	40	2.1	40	88	4	125	33	21	20	25	1.97
658595--658649	22	2.5	22	90	3	83	38	14	14	32	1.87
662199--667259	6	852.8	6	95	2	8950	33	1	33	32	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
670871--670929	20	3.2	19	81	13	63	50	0	1	47	1.11
678593--678855	44	6.0	44	91	0	420	41	11	23	23	1.87
678594--678859	131	2.0	132	94	0	462	41	11	23	23	1.87
678593--678855	87	3.0	87	90	1	418	41	11	23	23	1.87
679250--679302	22	2.5	20	74	14	52	43	1	3	50	1.30
679326--679355	16	1.9	15	93	6	51	23	3	0	73	0.98
692295--692343	20	2.5	20	86	3	64	34	12	26	26	1.92
692762--692998	55	4.3	55	81	6	239	33	13	19	33	1.90
693186--693514	45	7.6	45	84	8	430	44	11	22	21	1.84
693233--693290	17	3.4	17	72	13	64	48	5	22	24	1.71
693221--693295	35	2.1	35	95	0	132	44	8	22	25	1.80
693186--693514	89	3.9	80	81	11	363	44	11	22	21	1.84
693282--693354	24	3.2	24	67	25	66	47	10	19	21	1.79
693268--693514	134	1.8	135	90	2	372	44	12	21	21	1.84
697709--697971	40	6.8	40	80	6	306	39	15	18	26	1.90
697734--697805	33	2.2	33	89	0	108	43	16	18	22	1.88
697767--697971	80	2.6	80	92	0	356	39	15	18	26	1.91
698982--699536	54	10.3	54	87	0	754	36	17	13	31	1.89
706348--706388	2	20.5	2	100	0	82	51	0	0	48	1.00
706545--706612	13	5.2	13	81	0	91	35	17	19	27	1.94
708655--708742	45	2.0	45	90	0	140	27	25	18	29	1.98
714586--714666	23	3.7	23	75	11	89	27	24	24	23	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
714567--714661	44	2.2	42	85	7	120	28	25	22	24	1.99
714653--714698	20	2.3	20	100	0	92	28	26	23	21	1.99
714585--714685	43	2.3	43	78	8	107	27	24	24	22	2.00
716199--716242	21	2.1	21	86	0	61	9	40	15	34	1.79
726690--726862	95	1.8	94	92	1	292	28	27	7	36	1.84
727236--727273	19	2.0	19	100	0	76	42	15	15	26	1.87
727410--727477	29	2.4	29	90	2	102	42	19	8	29	1.81
731666--731691	13	2.0	13	100	0	52	30	7	23	38	1.83
732843--732895	19	2.7	19	75	11	54	60	1	0	37	1.08
732926--732973	14	3.8	14	69	25	52	58	0	0	41	0.98
732958--733008	12	4.3	12	76	18	54	66	1	0	31	1.03
739695--739740	17	2.6	17	83	16	67	41	13	0	45	1.43
741122--741164	17	2.5	17	92	0	68	41	6	16	34	1.75
744843--745034	45	4.3	45	87	1	251	21	20	13	44	1.85
744844--745034	90	2.1	90	91	0	303	20	20	13	45	1.85
749884--749908	13	1.9	13	100	0	50	64	0	0	36	0.94
750210--750889	45	15.1	45	92	0	1047	33	20	22	23	1.97
750786--751011	122	1.9	122	85	3	321	34	20	18	25	1.96
750742--751056	167	1.9	167	88	2	481	35	20	20	23	1.96
750909--751074	45	3.7	45	86	3	201	34	21	20	23	1.96
751750--751807	22	2.6	22	94	0	98	34	13	17	34	1.89
752170--752408	52	4.5	54	82	4	297	26	22	14	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
752170--752408	106	2.2	106	91	2	372	26	22	14	36	1.93
752501--752678	75	2.4	75	89	0	266	29	23	16	30	1.97
756643--756675	12	2.8	12	100	0	66	54	0	21	24	1.45
756631--756714	38	2.2	38	81	12	102	57	3	14	25	1.53
757060--757092	15	2.1	16	88	5	50	51	0	3	45	1.16
757057--757096	20	2.0	20	86	13	57	50	0	2	47	1.14
757176--757204	2	14.5	2	100	0	58	48	0	0	51	1.00
762193--762249	18	3.2	18	90	5	80	47	10	8	33	1.69
766074--766289	108	2.0	108	99	0	423	38	15	12	33	1.85
770259--770287	6	4.8	6	100	0	58	68	0	0	31	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11