genome.fa.s7790.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007790.1 Hibiscus syriacus cultivar Beakdansim tig00110076_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2956777

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  7  of  11  ( 1250 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1718617--1718692	36	2.1	36	95	0	134	40	9	25	25	1.84
1737147--1737202	21	2.6	22	77	5	60	62	5	19	12	1.49
1749691--1749736	20	2.3	19	85	14	58	50	8	15	26	1.73
1761260--1761449	90	2.1	90	99	0	371	29	20	11	38	1.88
1763187--1763245	21	2.9	21	87	2	84	25	16	23	33	1.96
1770439--1770477	21	1.9	21	94	5	71	33	12	23	30	1.92
1770533--1770585	21	2.5	21	93	0	88	26	18	22	32	1.97
1772465--1772529	28	2.3	28	89	0	94	36	29	12	21	1.90
1775634--1775688	28	2.0	28	85	0	74	25	14	23	36	1.93
1784459--1784519	17	3.5	17	76	12	61	42	18	11	27	1.84
1792275--1792345	36	2.0	36	94	5	126	33	12	19	33	1.90
1810049--1810374	180	1.8	181	82	8	423	39	11	11	37	1.77
1810896--1810936	22	1.9	21	85	14	57	31	0	9	58	1.31
1811415--1811688	136	2.0	136	96	0	503	44	14	7	33	1.72
1815049--1815091	22	2.0	22	95	0	77	41	6	4	46	1.51
1815137--1815181	23	2.0	23	86	0	63	60	4	4	31	1.37
1815137--1815532	195	2.0	194	84	4	512	46	8	6	38	1.60
1815399--1815497	31	3.1	32	75	5	94	47	7	6	39	1.56
1816327--1816479	65	2.4	65	84	4	184	29	20	21	28	1.98
1821080--1821133	25	2.2	25	96	0	99	20	18	7	53	1.68
1824245--1824402	65	2.4	66	88	5	223	30	18	21	29	1.97
1831384--1831429	20	2.3	20	88	3	67	36	26	0	36	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1834590--1834668	24	3.3	24	72	0	77	22	25	13	37	1.91
1835793--1835833	2	20.0	2	90	5	64	46	0	2	51	1.14
1836507--1836716	65	3.3	63	75	14	185	31	23	18	26	1.97
1836688--1836736	19	2.6	19	84	9	57	24	28	20	26	1.99
1842400--1842480	24	3.5	24	70	20	75	22	24	23	29	1.99
1843850--1843893	21	2.1	21	86	0	61	9	40	13	36	1.76
1843878--1844004	63	2.0	63	98	0	245	15	35	17	31	1.91
1844367--1844414	2	24.0	2	100	0	96	50	0	0	50	1.00
1844808--1844848	21	2.0	20	86	13	57	34	7	9	48	1.64
1847408--1847463	26	2.2	26	84	12	71	37	0	1	60	1.07
1847404--1847464	25	2.4	25	75	21	65	39	0	1	59	1.08
1849354--1849402	18	2.8	17	90	6	80	8	12	10	69	1.37
1849360--1849401	18	2.3	18	100	0	84	9	9	9	71	1.32
1853804--1853875	35	2.1	35	100	0	144	34	23	8	33	1.85
1856773--1856815	20	2.2	20	87	8	61	18	39	13	27	1.89
1858999--1859030	16	2.0	16	93	0	55	34	40	12	12	1.81
1861022--1861047	13	2.0	13	100	0	52	38	15	23	23	1.92
1861070--1861108	14	2.9	14	88	3	53	20	20	30	28	1.98
1866836--1866949	47	2.4	47	91	0	183	39	7	18	35	1.78
1884931--1884988	29	2.1	27	83	6	71	22	6	1	68	1.22
1884899--1884975	5	15.2	5	74	12	59	20	6	1	71	1.16
1887966--1888021	15	3.7	14	76	21	51	73	8	16	1	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1888645--1888699	22	2.5	22	96	0	101	36	29	12	21	1.91
1889557--1894401	106	45.7	106	88	2	6898	33	24	18	23	1.96
1894220--1894792	186	2.9	189	83	8	630	35	25	16	22	1.95
1894395--1899158	106	44.9	106	89	1	6882	34	24	18	23	1.96
1894395--1912689	212	86.2	212	88	2	26006	33	24	18	23	1.96
1894411--1912689	318	57.4	318	88	2	26011	33	24	18	23	1.96
1899083--1899244	86	1.9	86	96	0	297	37	26	14	21	1.92
1899099--1899245	43	3.4	43	69	20	135	37	26	14	21	1.92
1899158--1912689	106	127.3	106	89	2	19292	33	24	18	23	1.96
1913832--1913874	2	21.5	2	100	0	86	48	0	0	51	1.00
1914012--1914137	49	2.7	45	73	19	116	26	3	2	67	1.18
1914055--1914136	21	3.8	21	75	18	71	24	3	2	69	1.17
1914013--1914116	23	4.3	23	72	18	79	27	2	1	67	1.16
1914055--1914137	22	3.8	20	75	15	69	24	3	2	69	1.16
1914198--1914245	20	2.5	19	83	9	62	27	10	0	62	1.27
1914973--1915025	23	2.5	22	79	11	56	26	24	28	20	1.99
1914987--1915031	23	2.0	23	95	0	81	22	31	24	22	1.99
1923783--1923844	19	3.2	19	80	17	65	19	30	29	20	1.97
1935164--1935200	19	1.9	19	100	0	74	5	0	51	43	1.24
1942335--1942381	19	2.5	18	86	6	67	51	0	25	23	1.49
1952318--1952360	22	1.9	23	86	13	63	39	6	4	48	1.51
1952456--1952496	21	2.0	21	85	9	57	19	7	7	65	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1958353--1958523	56	3.0	57	86	1	245	34	30	20	14	1.93
1961015--1961060	13	3.5	13	93	0	83	15	21	45	17	1.85
1961014--1961072	26	2.3	27	77	14	70	16	20	44	18	1.87
1968780--1969329	272	2.0	266	94	3	695	39	13	18	28	1.89
1982375--1982417	19	2.3	19	95	0	77	34	18	11	34	1.87
1984410--1984451	8	5.2	8	94	0	75	11	33	0	54	1.37
1984995--1985411	207	2.0	209	98	0	811	38	23	13	24	1.90
1993270--1993304	12	2.8	12	91	4	52	37	8	5	48	1.58
1995312--1995459	65	2.3	65	95	0	260	32	23	13	30	1.93
1995312--1995502	65	2.9	65	86	4	217	34	22	13	30	1.92
1997650--1997694	20	2.3	20	88	3	65	37	24	0	37	1.56
2000223--2000448	114	2.0	112	96	3	418	44	11	8	34	1.73
2004608--2004675	31	2.2	31	86	5	93	30	8	10	50	1.67
2004802--2004865	27	2.4	27	86	0	83	56	0	3	40	1.15
2005678--2005752	31	2.4	32	88	6	109	46	13	9	30	1.74
2007186--2007244	23	2.5	23	91	5	91	22	6	13	57	1.59
2008445--2008488	21	2.1	21	95	0	79	25	22	13	38	1.91
2008449--2008494	21	2.2	21	88	0	65	26	23	17	32	1.97
2008378--2008510	20	6.5	21	73	5	67	32	25	14	27	1.94
2008504--2008542	20	2.0	20	94	0	69	46	25	12	15	1.81
2009069--2009121	20	2.7	20	93	0	88	13	20	18	47	1.82
2009059--2009132	20	3.8	20	85	1	78	17	17	18	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2011269--2011380	21	5.4	21	77	14	115	18	37	21	22	1.94
2011267--2011380	42	2.7	42	89	4	160	18	37	21	22	1.94
2011885--2011917	16	2.0	17	88	5	50	18	3	27	51	1.60
2013299--2013352	24	2.2	24	93	0	90	40	20	18	20	1.91
2013299--2013368	24	2.9	24	84	0	68	38	21	17	22	1.93
2014268--2014380	20	5.7	20	82	8	104	28	14	24	32	1.94
2014268--2014338	19	3.6	19	86	9	81	30	11	22	35	1.89
2019213--2019247	18	1.9	18	94	0	61	40	14	2	42	1.60
2020495--2020538	22	2.0	22	100	0	88	31	13	0	54	1.39
2021377--2021420	22	2.0	22	100	0	88	31	13	0	54	1.39
2022106--2022142	18	2.1	18	89	0	56	29	16	43	10	1.82
2023524--2023575	26	2.0	26	100	0	104	34	15	15	34	1.89
2027459--2027512	27	2.0	27	96	0	99	27	3	44	24	1.70
2028550--2028585	16	2.3	15	90	4	54	52	5	13	27	1.63
2036567--2036629	21	3.0	21	88	2	81	38	22	14	25	1.92
2037337--2037570	80	2.9	79	92	3	371	35	10	23	30	1.88
2040306--2040646	55	6.2	55	91	0	556	36	11	18	34	1.86
2060723--2060762	21	1.9	21	85	10	55	35	10	2	52	1.48
2065531--2065599	20	3.5	19	88	2	84	39	8	15	36	1.79
2068324--2068381	20	3.0	20	89	2	91	34	10	18	36	1.85
2079732--2079812	31	2.6	30	72	14	74	39	9	6	44	1.63
2080894--2081066	60	2.9	60	76	6	172	31	20	6	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2081478--2081605	64	2.0	64	100	0	256	42	12	20	25	1.87
2082882--2082930	2	25.0	2	91	4	82	51	0	2	46	1.12
2091499--2091616	36	3.2	36	68	9	110	26	16	16	40	1.89
2091399--2091629	76	3.1	75	91	1	356	29	16	16	38	1.90
2091459--2091592	40	3.4	38	71	11	119	32	15	13	38	1.86
2091656--2092092	39	11.3	39	85	4	573	32	17	14	35	1.91
2091656--2092092	77	5.7	78	86	4	573	32	17	14	35	1.91
2097516--2097570	22	2.5	22	90	0	83	29	10	32	27	1.91
2103021--2103103	29	2.9	29	75	7	80	16	31	32	19	1.94
2103186--2103247	31	2.0	31	93	0	106	25	38	14	20	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11