genome.fa.s7800.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007800.1 Hibiscus syriacus cultivar Beakdansim tig00110114_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4652821

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  10  of  23  ( 2671 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1937551--1937598	19	2.5	20	75	3	53	29	10	8	52	1.65
1938875--1938934	22	2.8	22	75	12	63	15	25	38	21	1.92
1938875--1938934	20	2.8	22	80	12	63	15	25	38	21	1.92
1941426--1941461	18	1.9	19	88	5	56	69	2	2	25	1.15
1942016--1942051	5	6.5	6	93	6	51	44	0	55	0	0.99
1942019--1942051	16	2.1	16	88	11	50	45	0	54	0	0.99
1942349--1942391	3	14.0	3	95	4	77	67	0	32	0	0.91
1945022--1945047	2	13.0	2	100	0	52	50	0	0	50	1.00
1946362--1946423	22	2.8	22	97	0	115	48	0	3	48	1.17
1952759--1952788	2	15.0	2	100	0	60	50	0	0	50	1.00
1969349--1969411	23	2.7	22	80	9	72	15	25	26	31	1.96
1978883--1978953	35	2.0	35	97	0	133	23	11	14	50	1.74
1982016--1982040	4	6.2	4	100	0	50	24	28	24	24	2.00
1986408--1986459	25	2.0	26	85	3	70	50	0	0	50	1.00
1988448--1988593	71	2.1	71	88	2	213	28	17	21	32	1.96
1988635--1988715	37	2.2	37	91	4	130	34	4	16	44	1.69
1992422--1992531	45	2.4	45	86	1	139	30	13	21	33	1.92
1992838--1992962	55	2.3	55	94	2	216	44	12	21	21	1.84
1993504--1993653	72	2.1	72	97	0	282	37	12	26	24	1.90
1995669--1995696	2	14.0	2	100	0	56	50	0	0	50	1.00
1996967--1997215	125	2.0	125	84	3	331	32	14	26	26	1.95
1998419--1998513	36	2.6	37	84	3	129	34	21	22	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1998918--1999133	54	4.0	54	94	0	360	34	17	27	20	1.95
1999134--1999447	55	5.7	55	79	9	320	34	16	21	28	1.95
1999094--1999460	166	2.2	165	92	1	594	33	16	22	27	1.96
1999583--1999687	53	2.0	53	86	3	149	32	19	25	22	1.97
1999870--1999915	19	2.3	20	81	7	58	28	28	17	26	1.98
2000021--2000070	20	2.5	20	93	0	82	30	24	18	28	1.97
2000686--2000831	19	8.1	19	73	17	114	13	23	19	43	1.86
2000719--2000806	33	2.6	33	92	1	140	12	25	21	40	1.88
2004392--2004427	14	2.6	14	95	0	63	30	0	25	44	1.54
2004552--2004608	14	3.7	14	75	20	60	43	22	24	8	1.81
2004534--2004623	33	2.7	33	94	0	153	43	21	22	13	1.87
2004534--2004594	19	3.5	19	74	21	69	44	21	22	11	1.84
2004623--2004748	33	3.9	32	82	10	166	15	21	19	44	1.86
2004616--2004747	65	2.0	66	92	1	221	16	21	18	43	1.88
2007021--2007045	12	2.1	12	100	0	50	0	28	0	72	0.86
2008004--2008098	20	4.7	20	78	10	95	21	20	26	32	1.97
2008025--2008119	41	2.3	41	87	3	129	18	21	25	34	1.96
2008169--2008209	21	2.0	21	85	0	55	34	31	17	17	1.93
2014444--2014518	3	25.0	3	86	5	107	36	1	1	61	1.13
2015881--2015927	16	2.9	16	78	15	53	34	4	0	61	1.15
2016084--2016133	23	2.0	26	85	11	70	46	2	0	52	1.12
2019979--2020010	15	2.1	15	94	0	55	28	18	6	46	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2023785--2023821	18	2.0	19	89	5	58	24	13	0	62	1.31
2027341--2027412	1	72.0	1	80	0	81	90	1	8	0	0.52
2027338--2027413	19	4.2	17	87	12	107	88	1	10	0	0.58
2027341--2027410	15	4.5	15	84	12	97	90	1	8	0	0.53
2027341--2027413	18	3.9	18	89	8	103	89	1	9	0	0.56
2027338--2027413	26	2.7	28	86	10	111	88	1	10	0	0.58
2028683--2028919	115	2.1	115	92	1	388	33	14	21	30	1.93
2029667--2029712	24	2.0	23	83	12	58	52	6	23	17	1.68
2029618--2030159	113	4.8	113	82	4	593	39	13	17	29	1.89
2029656--2030159	225	2.3	223	83	6	612	39	13	18	28	1.88
2030103--2030194	36	2.6	36	96	0	166	48	10	21	18	1.78
2030103--2030159	17	3.2	17	69	26	55	49	8	22	19	1.76
2030096--2030478	160	2.4	160	95	2	686	43	14	19	22	1.87
2030256--2030354	40	2.6	39	87	6	141	50	9	22	18	1.74
2030301--2030576	124	2.3	119	85	7	362	42	16	18	22	1.89
2030721--2030785	3	21.0	3	93	3	103	36	0	0	63	0.95
2032367--2032416	23	2.0	26	85	11	70	46	2	0	52	1.12
2040890--2040969	29	2.8	29	90	0	115	20	17	25	37	1.94
2041488--2041519	16	2.0	16	93	0	55	40	0	15	43	1.47
2041559--2041633	11	6.2	11	71	22	53	46	0	10	42	1.38
2042517--2042562	13	3.7	13	82	11	60	45	2	4	47	1.34
2042516--2042562	24	2.0	24	91	0	76	46	2	4	46	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2042610--2042661	14	3.7	14	80	7	52	50	9	0	40	1.35
2042581--2042709	64	2.0	64	85	8	174	49	10	0	38	1.43
2042638--2042680	15	2.9	15	85	0	50	51	9	0	39	1.34
2042589--2042773	102	1.8	100	80	13	225	49	10	1	38	1.44
2043317--2043350	17	2.1	16	89	10	52	41	5	11	41	1.66
2044043--2044120	29	2.7	29	87	0	102	21	16	24	37	1.94
2044781--2044826	24	2.0	24	86	4	67	47	2	4	45	1.34
2044902--2044933	16	2.0	16	100	0	64	43	18	0	37	1.51
2044916--2044981	21	3.0	21	73	16	69	53	10	0	36	1.36
2044895--2044989	21	4.6	20	67	25	54	49	13	0	36	1.43
2046262--2046341	29	2.8	29	88	0	106	21	17	23	37	1.94
2047000--2047046	24	2.0	24	86	0	67	46	2	6	44	1.40
2047061--2047199	25	5.7	25	69	16	96	51	11	0	36	1.38
2047120--2047150	15	2.0	16	93	6	55	45	19	0	35	1.51
2048708--2048782	22	3.5	22	90	1	107	20	26	24	29	1.99
2048714--2048807	22	4.3	22	84	2	100	19	22	27	30	1.98
2048710--2048807	43	2.2	44	81	1	117	19	22	27	30	1.98
2055623--2055718	22	4.5	22	80	5	101	18	23	27	30	1.98
2055683--2055719	18	2.1	18	100	0	74	18	21	32	27	1.97
2056349--2056399	14	3.8	13	73	21	52	45	17	0	37	1.49
2056344--2056405	26	2.5	25	89	5	90	45	17	0	37	1.49
2062920--2063047	20	6.3	21	69	14	83	35	22	14	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2062908--2062995	20	4.4	20	71	13	65	35	21	14	28	1.93
2063071--2063158	20	4.4	20	70	11	63	27	21	13	37	1.91
2063054--2063197	60	2.4	60	78	6	157	32	18	13	35	1.90
2063013--2063126	40	2.8	39	81	10	122	31	20	13	35	1.91
2063151--2063197	20	2.3	20	81	0	58	36	19	12	31	1.89
2063427--2063471	20	2.2	20	84	7	56	40	11	8	40	1.72
2063606--2063670	34	1.9	34	87	0	94	16	13	26	43	1.86
2063586--2063690	54	1.9	54	86	3	149	20	14	24	40	1.90
2063586--2063702	20	6.2	20	73	11	102	21	13	23	41	1.88
2065039--2065207	42	4.0	42	90	0	259	24	36	14	24	1.93
2065152--2065207	21	2.8	20	74	17	53	30	35	14	19	1.91
2065172--2065245	21	3.7	21	67	20	50	29	37	12	20	1.89
2065345--2065492	21	7.1	21	69	9	97	22	10	31	35	1.89
2065359--2065474	42	2.8	42	83	0	142	23	11	31	34	1.90
2065821--2065952	21	6.3	20	77	11	106	21	36	14	28	1.92
2065825--2065946	42	2.9	42	79	6	122	20	36	14	28	1.92
2071531--2071610	40	2.0	41	82	7	101	38	15	21	25	1.92
2071531--2071578	20	2.4	20	82	6	62	37	16	20	25	1.93
2071689--2071729	21	2.0	21	90	0	64	29	7	17	46	1.74
2071711--2071782	20	3.6	20	79	7	74	29	8	23	38	1.84
2075098--2075126	7	4.1	7	100	0	58	41	31	0	27	1.56
2076883--2076936	28	1.9	28	88	0	81	27	3	5	62	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2077168--2077334	28	6.1	28	84	12	176	55	0	0	43	1.04
2077186--2077342	24	6.0	26	83	13	132	56	0	0	43	0.99
2077186--2077336	27	5.7	25	84	13	141	56	0	0	43	0.99
2078446--2078475	3	10.0	3	100	0	60	33	0	0	66	0.92
2093908--2093958	24	2.2	23	82	10	59	50	11	11	25	1.72
2097714--2097758	22	2.0	22	83	8	56	44	11	6	37	1.66
2099369--2099430	6	10.3	6	80	16	58	64	1	0	33	1.03
2099369--2099432	16	3.8	16	80	14	67	64	1	0	34	1.03
2099370--2099430	22	2.6	23	77	20	63	63	1	0	34	1.04
2099428--2099596	70	2.4	71	83	5	211	42	10	5	41	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23