Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007800.1 Hibiscus syriacus cultivar Beakdansim tig00110114_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4652821

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  23  of  23  ( 2671 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4604930--4604971
21
2.0
21
90
0
66
50
7
11
30
1.66
4611145--4611209
31
2.1
32
82
2
78
21
7
13
56
1.62
4611273--4611346
31
2.4
31
86
4
105
43
5
4
47
1.45
4614069--4614137
20
3.2
23
60
16
56
33
27
23
15
1.95
4614045--4614186
43
3.3
43
94
2
241
35
25
23
15
1.94
4614838--4614880
18
2.4
18
92
0
68
9
20
51
18
1.74
4617241--4617301
25
2.2
29
83
13
76
60
3
9
26
1.43
4617439--4617536
29
3.3
29
77
8
92
61
10
12
16
1.57
4617460--4617536
30
2.6
30
79
4
93
61
10
10
18
1.56
4617575--4617616
12
3.7
11
81
12
50
61
2
16
19
1.44
4618349--4618409
25
2.2
29
83
13
76
60
1
9
27
1.38
4618572--4618673
30
3.4
30
82
2
116
59
10
11
17
1.59
4618547--4618705
59
2.7
59
75
8
151
59
10
12
17
1.61
4618547--4618653
29
3.7
29
77
7
101
61
12
12
14
1.57
4619909--4619945
20
1.9
19
89
10
58
45
10
24
18
1.81
4620093--4620123
15
2.1
15
93
0
53
54
0
0
45
0.99
4622205--4622273
23
3.0
23
84
0
102
30
26
26
17
1.97
4623151--4623196
20
2.3
20
96
0
83
30
21
4
43
1.72
4627560--4627628
23
3.0
23
80
0
84
33
27
20
18
1.96
4627893--4627921
7
4.3
7
95
4
51
44
24
0
31
1.54
4634554--4634590
17
2.2
17
90
0
56
75
0
0
24
0.80
4636401--4636447
22
2.1
22
84
7
60
78
4
6
10
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4636436--4636491
19
2.9
19
73
7
60
69
3
3
23
1.20
4636693--4636745
20
2.7
19
76
18
54
66
1
1
30
1.13
4636694--4636747
23
2.5
20
81
18
65
66
1
1
29
1.12
4638827--4639286
105
4.4
105
99
0
911
21
18
25
34
1.96
4640014--4640115
53
1.9
53
87
0
150
13
23
13
49
1.78
4649445--4649488
20
2.2
20
88
8
63
72
2
6
18
1.17
4650547--4650602
19
2.9
19
73
7
60
69
3
3
23
1.20
4650609--4650638
14
2.1
14
93
0
51
90
0
6
3
0.56
4650799--4650847
18
2.6
19
82
17
66
67
2
2
28
1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23

The End!