genome.fa.s7800.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007800.1 Hibiscus syriacus cultivar Beakdansim tig00110114_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4652821

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  12  of  23  ( 2671 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2327551--2327658	33	3.3	33	98	0	207	44	21	24	10	1.83
2327667--2327720	19	2.8	20	82	5	74	7	18	25	48	1.74
2327666--2327760	20	4.8	20	74	5	84	12	16	24	46	1.82
2327811--2328096	94	3.1	93	94	1	482	47	18	12	21	1.81
2328008--2328036	12	2.3	13	94	5	51	72	17	6	3	1.21
2329766--2329868	20	5.8	19	76	15	73	44	19	24	11	1.84
2329815--2329851	14	2.6	14	100	0	74	40	24	27	8	1.83
2329869--2329969	20	5.5	19	71	16	70	10	16	22	49	1.77
2329919--2329969	20	2.5	20	90	0	75	13	13	21	50	1.76
2330500--2330596	41	2.4	40	87	1	140	21	20	19	38	1.94
2330500--2330603	20	5.2	20	84	4	120	23	20	19	37	1.94
2330520--2330604	20	4.1	21	87	4	129	21	20	18	40	1.92
2331308--2331383	20	3.8	20	85	5	93	51	18	17	13	1.76
2331364--2331443	33	2.4	33	89	0	115	50	22	17	10	1.76
2333181--2333337	82	1.9	82	92	0	260	24	13	17	44	1.84
2333251--2333454	94	2.2	93	91	1	327	21	11	18	48	1.80
2333521--2333645	19	6.9	19	71	19	90	48	20	20	11	1.80
2333563--2333619	14	3.7	14	75	20	60	43	22	24	8	1.81
2333545--2333675	33	3.9	33	91	1	199	46	23	21	8	1.78
2333641--2333678	20	1.9	20	88	0	58	50	26	18	5	1.68
2333684--2333804	19	6.8	19	68	19	82	12	23	19	44	1.84
2333687--2333780	33	2.8	33	91	0	161	11	24	20	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2334230--2334323	42	2.2	42	79	7	102	24	34	19	22	1.97
2335654--2335689	14	2.6	14	95	0	63	33	0	22	44	1.53
2335796--2335861	19	3.5	19	84	12	82	48	19	18	13	1.81
2335807--2335868	19	3.2	20	90	4	92	53	16	17	12	1.73
2335807--2335876	19	3.6	19	90	3	88	51	17	17	14	1.77
2335872--2336022	19	8.7	19	64	21	80	11	24	19	43	1.85
2335876--2336002	33	3.8	33	95	0	227	11	25	18	44	1.84
2335897--2335984	14	5.6	14	72	23	68	11	26	19	43	1.84
2335996--2336068	20	3.6	20	70	17	69	24	17	23	34	1.96
2338528--2338581	24	2.2	24	93	0	90	40	20	18	20	1.91
2338528--2338595	24	2.8	24	84	0	64	38	20	17	23	1.93
2339850--2339875	2	13.0	2	100	0	52	50	0	0	50	1.00
2345365--2345405	22	2.0	20	85	9	55	34	4	12	48	1.62
2346006--2346044	3	13.0	3	100	0	78	66	0	0	33	0.92
2346043--2346091	3	16.3	3	95	0	89	36	0	0	63	0.95
2346006--2346092	6	14.3	6	93	2	57	50	0	0	49	1.00
2346518--2346543	2	13.0	2	100	0	52	50	0	0	50	1.00
2350945--2350992	21	2.3	21	92	0	78	27	16	12	43	1.84
2353795--2353842	17	2.7	18	77	9	53	52	8	0	39	1.32
2353959--2354001	20	2.3	19	84	11	61	25	30	6	37	1.82
2356639--2357093	225	2.0	227	97	2	871	39	18	14	28	1.89
2358781--2358841	3	20.3	3	100	0	122	0	34	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2361991--2362019	13	2.2	13	100	0	58	6	62	31	0	1.22
2362755--2362870	23	5.3	22	72	17	91	58	0	0	40	1.04
2362755--2362874	3	40.7	3	77	12	97	59	0	0	40	1.03
2362996--2363731	76	9.8	76	94	3	1278	35	21	21	22	1.96
2363588--2363810	121	1.8	119	91	4	367	34	21	21	22	1.97
2363663--2363775	45	2.5	45	94	4	192	32	20	23	23	1.98
2364875--2365078	53	3.9	54	83	6	267	24	22	13	39	1.90
2364875--2365077	104	1.9	103	88	4	300	24	22	13	39	1.90
2366196--2366266	35	2.0	35	84	10	92	28	23	14	33	1.94
2367147--2367350	114	1.8	112	87	4	302	30	21	16	32	1.95
2375739--2375767	13	2.2	13	100	0	58	6	62	31	0	1.22
2376517--2376644	3	41.7	3	84	7	150	60	0	0	38	1.02
2377215--2377261	18	2.4	21	74	25	50	55	8	0	36	1.31
2377330--2377503	30	5.8	30	75	8	140	37	9	1	51	1.45
2378364--2378409	24	1.9	24	90	0	74	26	10	19	43	1.84
2380435--2380505	34	2.1	34	100	0	142	45	11	2	40	1.55
2381600--2381634	2	17.5	2	100	0	70	48	0	0	51	1.00
2388350--2388445	44	2.2	43	84	1	120	30	21	20	27	1.98
2391076--2391211	66	2.1	65	86	4	184	29	19	17	33	1.95
2391105--2391231	65	1.9	66	84	4	168	30	18	15	34	1.93
2399396--2399428	11	3.1	11	91	4	50	6	12	0	81	0.85
2405507--2405532	2	13.0	2	100	0	52	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2412445--2412547	51	2.0	51	100	0	206	53	13	19	13	1.73
2417293--2417328	18	1.9	19	88	5	56	69	0	13	16	1.19
2418484--2418533	24	2.1	24	81	7	57	68	0	0	32	0.90
2418874--2419020	67	2.2	66	87	1	204	38	12	21	28	1.89
2418970--2419150	37	5.1	37	77	16	204	40	13	19	27	1.88
2418905--2419150	102	2.4	104	89	3	390	40	13	19	26	1.88
2419070--2419177	37	2.9	36	87	8	130	39	13	19	26	1.89
2419253--2419910	253	2.6	252	86	2	899	25	18	23	32	1.97
2419982--2420168	90	2.0	90	85	6	250	26	18	23	31	1.98
2419896--2420277	200	1.9	200	85	0	530	25	18	23	33	1.96
2421066--2421293	95	2.6	88	82	10	270	33	19	17	29	1.95
2421125--2421303	95	1.9	95	89	2	279	31	18	17	32	1.94
2423384--2423435	19	2.6	20	87	6	70	42	5	15	36	1.71
2424091--2424150	30	2.0	31	83	3	77	55	10	8	26	1.61
2426563--2426613	5	9.8	5	82	16	52	1	19	0	78	0.85
2426556--2426613	8	7.0	8	84	13	73	1	22	0	75	0.89
2427333--2427384	19	2.6	20	87	6	70	42	5	15	36	1.71
2427437--2427463	11	2.5	11	100	0	54	25	0	25	48	1.52
2427945--2428004	30	2.0	31	83	3	77	55	10	8	26	1.61
2432394--2432443	21	2.4	21	100	0	100	8	20	24	48	1.76
2434538--2434579	14	3.0	14	100	0	84	21	35	0	42	1.53
2435344--2435382	2	19.5	2	94	0	69	46	2	0	51	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2436522--2436581	20	3.0	20	85	0	84	48	18	20	13	1.81
2436570--2436625	14	3.6	14	74	21	58	39	25	25	10	1.87
2436549--2436642	33	2.8	33	95	1	161	42	23	22	11	1.86
2436643--2436735	33	2.8	32	88	4	123	10	20	24	44	1.83
2436673--2436741	20	3.8	19	68	26	60	11	21	21	44	1.84
2437276--2437385	20	5.4	20	81	6	71	22	20	20	37	1.95
2437292--2437528	41	5.8	40	73	8	147	27	19	18	35	1.95
2437292--2437531	20	11.8	20	72	15	118	27	19	18	35	1.95
2437518--2437570	21	2.5	22	81	6	74	33	18	24	22	1.97
2438498--2438571	37	2.0	37	87	7	107	48	2	1	47	1.24
2438886--2438927	22	1.9	22	95	0	75	21	16	33	28	1.95
2440246--2440273	14	2.0	14	100	0	56	64	7	0	28	1.20
2440495--2440546	8	7.1	8	76	23	53	51	0	9	38	1.35
2440508--2440556	21	2.3	20	89	10	71	53	0	8	38	1.31
2440498--2440559	29	2.1	30	88	8	92	54	0	8	37	1.30
2440725--2440776	18	2.8	19	77	19	56	19	25	7	48	1.75
2443502--2443544	21	2.0	22	86	9	61	27	6	2	62	1.33
2444759--2444785	2	13.5	2	100	0	54	48	0	0	51	1.00
2446556--2446744	45	4.2	44	81	8	227	34	11	16	37	1.84
2446556--2446743	91	2.1	90	87	5	263	35	11	15	37	1.84
2446941--2447104	45	3.6	46	81	4	192	31	9	18	39	1.84
2447277--2447621	58	6.0	57	77	14	325	36	6	13	42	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2447312--2447483	62	2.8	63	83	7	187	36	5	14	43	1.68
2447654--2447875	40	5.6	40	77	7	238	34	6	15	43	1.72
2447625--2447880	79	3.2	77	79	7	255	36	7	14	41	1.74
2447864--2447898	17	2.0	18	94	5	63	40	0	20	40	1.52
2447824--2447937	56	2.0	57	91	1	185	35	4	15	44	1.67
2447883--2448057	39	4.5	40	73	7	137	36	6	13	44	1.70
2447798--2447976	95	1.9	97	81	4	220	36	5	14	44	1.67
2448454--2448523	20	3.6	19	77	9	61	35	7	20	37	1.80
2448960--2449033	35	2.1	35	97	0	139	22	12	31	33	1.91
2448960--2449044	35	2.5	35	92	3	129	22	11	30	35	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23