genome.fa.s7883.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007883.1 Hibiscus syriacus cultivar Beakdansim tig00110263_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1590433

Tables:   1   2   3   4   5   6   7   8   9   

This is table  3  of  9  ( 970 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307215--307278	19	3.3	19	83	12	69	28	29	26	15	1.96
307241--307299	20	2.9	20	87	9	84	30	25	27	16	1.97
310529--310612	23	3.7	23	85	0	123	16	27	25	30	1.97
312153--312185	10	3.4	10	87	4	50	69	0	9	21	1.15
312115--312202	39	2.3	38	81	12	101	63	2	5	28	1.29
312307--312389	40	2.1	40	88	2	123	42	6	3	48	1.45
312373--312452	35	2.4	32	82	13	99	45	8	3	42	1.53
312307--312451	34	4.1	34	77	17	127	42	7	4	45	1.51
316560--316643	23	3.7	23	85	0	123	16	27	25	30	1.97
316743--316797	2	27.5	2	100	0	110	50	0	0	49	1.00
317830--317954	31	4.0	31	92	2	198	36	23	20	20	1.95
318754--318798	21	2.1	21	87	0	63	15	24	28	31	1.96
320635--320699	28	2.2	30	81	10	80	43	6	6	44	1.54
320663--320882	35	5.9	39	78	15	170	45	7	3	43	1.50
320689--320860	34	4.8	33	75	18	118	47	8	3	41	1.50
323667--323740	3	24.7	3	94	0	121	35	2	0	62	1.10
324209--324260	20	2.6	19	82	8	68	76	3	19	0	0.93
324320--324351	15	2.1	15	94	0	55	78	0	21	0	0.76
325910--325968	28	2.1	28	81	12	68	27	5	3	64	1.30
333040--333076	18	2.0	19	89	5	58	24	13	0	62	1.31
336591--336649	18	3.4	18	75	17	63	81	0	15	3	0.82
336601--336650	9	5.9	8	79	11	55	80	0	18	2	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336590--336649	16	3.5	18	78	15	65	80	0	16	3	0.85
336590--336650	17	3.6	16	74	24	54	78	0	18	3	0.88
336957--336996	16	2.5	16	88	8	55	30	7	10	52	1.62
337783--338329	82	6.6	83	93	2	838	27	13	23	36	1.92
338980--339535	115	4.9	114	93	3	901	37	13	19	30	1.90
339824--339924	3	33.7	3	95	0	175	34	1	0	63	1.06
340504--340535	15	2.1	15	94	0	55	78	0	21	0	0.76
342499--342555	14	4.4	14	76	17	59	10	10	22	56	1.64
342500--342561	24	2.6	24	89	0	97	11	9	22	56	1.63
342506--342574	24	2.9	24	86	4	68	14	8	17	59	1.60
343298--343372	10	7.7	10	69	21	61	9	12	21	57	1.62
343304--343368	16	4.1	16	95	0	121	7	12	23	56	1.61
345222--345285	32	2.0	32	100	0	128	31	18	15	34	1.93
349293--349317	12	2.1	12	100	0	50	36	0	16	48	1.46
350591--350668	41	1.9	41	86	0	111	38	11	23	26	1.89
359591--359676	44	2.0	44	88	4	129	33	25	16	24	1.95
363510--363543	16	2.1	17	88	5	52	44	11	0	44	1.40
366777--366974	99	2.0	97	91	5	317	32	8	15	42	1.77
379436--379470	18	1.9	18	94	0	61	51	11	11	25	1.71
382022--382074	26	2.0	26	82	7	63	43	0	11	45	1.40
382954--383232	83	3.4	81	80	4	290	30	16	22	30	1.96
383009--383229	41	5.4	41	69	14	132	31	16	21	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383010--383307	83	3.6	81	78	6	253	32	16	19	31	1.95
384682--384835	42	3.7	41	80	6	166	36	20	15	27	1.93
384682--384831	41	3.6	41	80	8	153	35	20	16	28	1.94
390938--391055	44	2.7	44	82	1	130	33	22	16	27	1.95
391091--391238	43	3.4	43	83	1	136	33	19	17	29	1.95
391122--391275	43	3.5	43	83	8	161	28	20	20	30	1.98
391437--391469	13	2.5	13	90	9	50	69	0	30	0	0.88
391506--391560	7	7.9	7	100	0	110	58	0	41	0	0.98
394823--395031	32	6.5	32	82	1	222	33	14	18	33	1.91
394823--395031	64	3.3	64	81	1	249	33	14	18	33	1.91
394823--395004	96	1.9	96	89	0	283	32	13	18	34	1.90
394823--395034	96	2.2	96	84	1	282	33	14	18	33	1.91
397331--397381	27	1.9	26	88	4	75	45	7	15	31	1.75
404105--404258	65	2.4	64	83	5	177	27	22	19	31	1.98
410041--410109	23	3.1	23	72	8	70	28	20	21	28	1.98
410041--410093	21	2.4	22	84	6	63	32	20	20	26	1.98
410549--410590	18	2.2	19	83	8	50	23	0	9	66	1.21
412810--412965	65	2.4	65	82	5	192	29	22	16	32	1.95
414323--414370	19	2.5	19	76	10	53	25	4	12	58	1.52
415520--415554	17	2.0	18	88	5	54	57	20	14	8	1.63
417833--417903	29	2.4	29	88	2	106	47	12	8	30	1.71
417822--418218	136	3.1	124	81	10	499	42	11	9	36	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417953--418030	29	2.7	29	87	2	120	46	10	7	35	1.67
417948--418291	139	2.5	139	90	1	523	40	11	9	37	1.75
418102--418163	29	2.1	29	96	0	115	43	12	8	35	1.73
417804--418362	139	4.2	133	80	10	490	40	11	11	37	1.76
418551--418591	20	2.0	20	90	0	64	36	0	2	60	1.10
420579--420609	11	2.8	11	95	0	53	70	0	29	0	0.87
420618--420646	14	2.1	14	93	6	51	75	0	24	0	0.80
422759--422805	2	23.5	2	95	0	85	46	0	2	51	1.13
422964--423012	2	24.0	2	91	4	80	48	2	2	46	1.25
424540--424904	112	3.3	111	86	5	479	32	13	23	30	1.93
425829--425959	52	2.5	52	98	0	253	25	14	32	27	1.94
428002--428040	21	1.9	20	89	5	60	33	20	15	30	1.94
437988--438082	11	8.4	11	73	9	66	6	13	1	78	0.98
437988--438081	6	15.7	6	72	16	61	6	13	1	78	0.99
438029--438084	28	2.0	28	89	6	87	8	14	3	73	1.21
437988--438081	17	5.9	17	70	20	69	6	13	1	78	0.99
443634--443675	21	2.0	21	90	0	66	35	16	21	26	1.94
447557--447614	25	2.3	25	82	8	73	36	10	10	43	1.73
447662--447730	30	2.3	30	89	0	102	37	4	24	33	1.75
447941--448008	23	3.0	23	85	8	77	20	25	26	27	1.99
454595--454662	30	2.3	30	87	2	93	38	4	25	32	1.76
454873--454940	23	3.0	23	88	0	91	20	25	26	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458119--458265	73	2.0	73	98	0	285	26	17	19	36	1.94
463504--463581	21	3.7	21	92	0	120	58	3	20	16	1.53
463761--463856	50	1.9	51	85	6	133	23	11	16	47	1.79
464104--464141	15	2.4	17	82	13	53	31	0	21	47	1.51
467820--467878	26	2.3	26	84	0	73	8	32	5	54	1.53
480605--480707	48	2.1	48	87	0	143	30	23	18	28	1.98
481829--481970	70	2.0	70	100	0	284	45	24	9	19	1.81
490594--490714	60	2.0	60	98	0	233	33	18	15	33	1.92
491688--491800	59	1.9	59	85	7	158	30	14	14	40	1.85
491688--491813	59	2.1	59	82	8	150	30	15	13	39	1.86
501600--501647	23	2.1	23	84	7	62	56	2	2	39	1.23
501739--501843	18	5.7	17	70	25	63	51	3	0	44	1.19
501740--501847	38	2.8	38	80	15	125	50	3	0	46	1.19
501973--502029	29	2.0	29	82	6	71	54	5	1	38	1.33
502011--502044	14	2.5	13	90	4	50	61	2	0	35	1.11
502890--502932	16	2.8	15	86	13	61	13	27	32	25	1.94
502890--502930	15	2.7	15	88	11	57	12	29	31	26	1.92
502968--503035	17	4.3	16	78	12	70	19	27	32	20	1.97
502968--503035	32	2.2	32	89	2	102	19	27	32	20	1.97
505290--505314	2	12.5	2	100	0	50	52	0	0	48	1.00
505557--505585	2	14.5	2	100	0	58	51	0	0	48	1.00
505230--505766	268	2.0	269	97	2	1026	43	13	9	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507821--507893	32	2.3	32	97	0	137	45	23	0	31	1.53
515956--515997	18	2.3	18	91	0	66	38	11	2	47	1.53
516937--516986	24	2.1	24	88	7	75	26	2	14	58	1.47
522559--522608	24	2.1	24	88	7	75	26	2	14	58	1.47
524440--524511	30	2.4	31	80	2	83	37	20	2	38	1.68
526463--526504	9	4.3	10	79	14	52	78	2	2	16	0.96
526462--526504	19	2.3	19	88	8	61	76	2	2	18	1.00
526692--526736	14	3.1	14	78	12	54	73	0	6	20	1.05
526695--526768	31	2.4	30	82	6	78	71	1	4	22	1.10
526706--526817	35	3.4	34	71	13	99	66	2	5	25	1.25

Tables:   1   2   3   4   5   6   7   8   9