genome.fa.s7883.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007883.1 Hibiscus syriacus cultivar Beakdansim tig00110263_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1590433

Tables:   1   2   3   4   5   6   7   8   9   

This is table  4  of  9  ( 970 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
526875--526945	23	3.1	22	73	11	63	67	0	5	26	1.12
528235--528493	36	7.3	36	76	14	207	41	12	19	26	1.87
528267--528453	102	1.8	102	84	6	254	38	11	20	29	1.88
528407--528622	102	2.1	102	91	0	351	36	12	19	31	1.89
528509--528595	37	2.4	36	84	1	102	39	14	20	25	1.91
528235--528595	138	2.6	137	82	4	422	39	12	19	27	1.88
528528--528706	87	2.1	87	94	0	313	35	12	18	32	1.89
528964--529317	106	3.3	106	88	2	476	21	20	24	32	1.98
529848--529935	32	2.8	32	80	3	97	34	20	15	29	1.94
530865--531002	69	2.0	69	85	2	188	26	11	22	39	1.88
531074--531131	25	2.4	24	88	8	91	3	15	3	77	1.04
531075--531126	12	4.1	13	80	11	63	1	13	3	80	0.93
534218--534305	19	4.5	19	70	16	56	73	4	5	15	1.18
534661--534705	2	23.0	2	84	13	58	51	0	4	44	1.21
534670--534720	25	2.0	27	84	7	70	56	0	3	39	1.18
539098--539167	16	4.4	16	89	7	97	21	27	11	40	1.87
539097--539167	32	2.2	32	92	0	115	21	26	12	39	1.89
539373--539402	9	3.3	9	100	0	60	63	0	0	36	0.95
539607--539659	21	2.5	21	78	6	54	22	0	24	52	1.47
539734--539787	15	3.4	15	74	20	56	42	5	3	48	1.44
539745--539787	13	3.3	13	75	12	52	44	6	2	46	1.43
539753--539807	20	2.6	21	82	8	67	40	10	5	43	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
539811--539837	13	2.1	13	100	0	54	55	0	0	44	0.99
539811--539853	13	3.1	14	86	6	52	55	0	2	41	1.12
539935--539972	20	1.9	19	89	5	58	23	7	18	50	1.73
540133--540214	7	11.7	7	75	5	60	19	0	28	52	1.46
540135--540214	14	5.7	14	86	2	99	20	0	26	53	1.45
540963--541028	31	2.2	31	86	2	89	48	3	6	42	1.43
541116--541160	22	2.0	23	95	4	83	46	0	8	44	1.34
541329--541396	21	3.2	21	71	8	66	19	0	32	48	1.49
541369--541396	7	4.0	7	100	0	56	14	0	42	42	1.45
541329--541396	14	4.9	14	74	0	64	19	0	32	48	1.49
541615--541741	2	66.0	2	66	21	58	44	5	2	47	1.39
541673--541742	25	2.9	24	79	10	81	44	4	2	48	1.37
541927--542005	19	4.1	19	77	8	79	31	25	0	43	1.55
542066--542240	2	90.0	2	64	23	63	45	2	3	48	1.34
542063--542200	28	4.8	30	74	13	105	46	2	3	47	1.35
542066--542170	13	7.7	13	77	15	88	45	2	3	47	1.35
542063--542232	13	13.2	13	71	18	79	46	2	3	47	1.35
545039--545153	24	4.8	24	85	6	135	41	20	13	24	1.88
545037--545153	48	2.4	48	85	7	157	41	19	13	24	1.88
552677--552766	7	12.4	7	74	19	62	80	1	15	3	0.91
552682--552758	18	4.2	18	82	11	93	81	1	14	2	0.86
552691--552766	24	3.2	24	78	10	84	81	1	15	1	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
553408--553468	28	2.1	29	93	3	106	34	36	4	24	1.77
553695--554045	54	6.6	53	82	8	349	32	10	16	40	1.82
553795--554046	54	4.7	54	86	2	355	32	8	17	41	1.80
553695--554104	108	3.8	107	80	7	381	33	10	17	39	1.83
553795--554106	54	5.7	54	80	11	203	33	8	17	39	1.81
555127--555655	139	3.8	139	88	2	789	35	17	20	25	1.95
555127--555655	274	1.9	277	88	2	796	35	17	20	25	1.95
558965--559083	10	10.9	10	69	19	69	57	18	13	10	1.63
558966--559053	23	3.8	24	86	3	99	59	19	12	9	1.60
558941--559069	57	2.3	57	82	8	147	56	17	13	11	1.67
559035--559083	20	2.5	20	93	0	80	57	16	14	12	1.66
559258--559310	10	5.3	10	83	0	70	62	15	7	15	1.53
559257--559310	20	2.7	20	88	0	81	62	14	7	14	1.51
559294--559338	14	3.2	14	83	0	63	53	22	15	8	1.69
566178--566217	16	2.5	16	95	0	71	5	15	32	47	1.66
567272--567778	55	9.4	55	85	3	688	28	28	14	29	1.95
567272--567774	108	4.6	108	91	2	742	28	28	14	29	1.95
567272--567778	163	3.1	161	87	4	709	28	28	14	29	1.95
567270--568231	51	18.1	55	81	9	421	25	26	16	30	1.97
567750--568241	51	9.5	50	83	7	531	23	25	18	32	1.97
567740--568230	156	3.1	153	84	5	612	23	24	18	32	1.97
568611--568873	36	7.4	36	83	4	293	20	19	23	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
576626--576665	16	2.5	16	95	0	71	5	15	32	47	1.66
579243--579327	43	2.0	43	82	13	104	62	4	1	31	1.23
579620--579671	19	2.8	18	77	11	52	51	1	1	44	1.23
581520--581545	4	6.5	4	100	0	52	23	0	0	76	0.78
590319--590383	11	5.6	11	72	22	53	26	21	26	26	2.00
590318--590386	23	3.0	23	82	2	93	26	21	26	26	2.00
593300--593362	11	5.9	11	73	14	60	39	1	1	57	1.18
594338--594382	13	3.5	12	82	14	54	82	4	13	0	0.82
595519--595716	110	1.8	110	88	0	306	35	22	18	24	1.96
597483--597555	33	2.2	33	92	0	119	30	9	41	19	1.83
598061--598107	19	2.5	20	89	6	71	10	8	0	80	0.89
598062--598118	12	4.8	12	81	14	57	12	7	0	80	0.89
601036--601090	7	7.9	7	93	6	94	0	16	0	83	0.64
602751--602826	11	6.5	11	68	25	50	63	3	3	28	1.30
602796--602855	15	3.8	17	73	13	65	70	0	6	23	1.11
602801--602844	19	2.3	19	84	7	54	70	0	4	25	1.06
604216--604280	3	21.0	3	81	6	76	60	0	1	38	1.07
604209--604280	24	3.0	23	86	11	92	58	0	1	40	1.07
604408--604593	75	2.5	76	91	2	304	33	22	20	23	1.97
605135--605179	23	1.9	23	82	13	56	15	24	6	53	1.66
605007--605489	113	4.3	111	87	5	632	28	18	14	37	1.91
605007--605489	226	2.1	224	89	3	727	28	18	14	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
605397--605563	73	2.3	73	85	4	221	34	16	16	33	1.91
605171--605788	299	2.1	299	95	1	1116	30	17	15	36	1.91
605470--606089	113	5.5	113	88	2	942	30	17	15	36	1.91
605005--606014	525	1.9	524	90	2	1627	30	18	14	36	1.91
606493--606547	22	2.5	22	85	11	85	36	14	12	36	1.84
606881--607049	54	3.2	54	86	2	218	25	21	15	37	1.92
609157--609490	114	2.9	114	93	0	542	30	20	15	33	1.93
613723--613778	27	2.1	27	86	0	76	60	8	12	17	1.57
613838--613879	7	6.0	7	78	10	50	54	14	16	14	1.71
616323--616382	15	3.8	17	73	13	65	70	0	6	23	1.11
616328--616371	19	2.3	19	84	7	54	70	0	4	25	1.06
617746--617813	3	22.0	3	82	5	82	60	0	1	38	1.06
620512--620793	141	2.0	141	95	0	510	32	15	23	28	1.95
629451--629493	22	2.0	21	86	4	59	18	13	25	41	1.88
637738--637812	32	2.3	33	84	11	102	20	37	24	18	1.94
637740--637830	32	2.8	32	81	6	96	20	39	20	18	1.93
639849--639892	21	2.2	20	95	4	79	63	0	0	36	0.95
641160--641254	49	1.9	49	86	0	136	20	36	28	14	1.92
644430--644575	60	2.4	60	79	6	172	35	12	16	35	1.86
644698--644935	78	3.0	74	81	12	246	47	3	4	44	1.40
644699--644936	39	6.0	41	74	14	189	47	3	4	44	1.40
644926--644986	18	3.7	16	76	17	54	40	1	6	50	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
644908--645017	31	3.5	32	81	8	120	41	1	5	50	1.36
645056--645120	3	21.7	3	78	12	71	30	4	0	64	1.14
645587--645624	15	2.5	15	83	8	51	60	28	10	0	1.30
646600--646652	10	5.4	10	79	4	54	13	0	3	83	0.79
646601--646664	22	2.9	22	83	6	67	15	3	3	78	1.01
646605--646677	29	2.6	28	85	6	87	16	2	4	76	1.05
649791--649826	15	2.4	15	90	0	54	30	13	13	41	1.84
651075--651183	24	4.5	24	79	6	114	20	15	17	46	1.84
651112--651181	12	5.8	12	75	6	61	17	14	18	50	1.79
651075--651183	48	2.3	48	87	6	150	20	15	17	46	1.84

Tables:   1   2   3   4   5   6   7   8   9