genome.fa.s7883.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007883.1 Hibiscus syriacus cultivar Beakdansim tig00110263_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1590433

Tables:   1   2   3   4   5   6   7   8   9   

This is table  5  of  9  ( 970 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
655509--655603	24	4.0	24	72	8	77	24	13	15	46	1.82
659890--659981	48	1.9	48	84	4	123	22	15	14	47	1.81
659910--659969	24	2.5	24	73	10	59	21	16	13	48	1.80
660140--660180	2	20.5	2	100	0	82	48	0	0	51	1.00
664309--664362	24	2.2	24	86	0	72	16	12	18	51	1.75
666151--666569	207	2.0	207	91	1	680	25	27	16	30	1.97
666980--667097	59	2.0	59	94	0	209	44	7	11	36	1.68
667995--668075	33	2.5	33	89	0	135	45	28	9	16	1.79
676512--676574	2	31.5	2	100	0	126	50	0	0	49	1.00
676751--676780	15	2.0	15	93	0	51	53	6	3	36	1.44
678077--678167	3	30.7	3	97	2	175	65	0	0	34	0.93
678297--679088	76	10.4	76	93	1	1325	35	20	18	25	1.95
679766--679839	22	3.4	22	92	0	130	39	16	10	33	1.83
680211--680310	50	2.0	50	90	0	155	28	21	13	38	1.90
684699--684733	6	5.8	6	86	0	52	0	20	0	80	0.72
684721--684759	16	2.5	15	84	12	51	5	20	0	74	1.01
684723--684778	18	3.3	17	82	7	60	7	21	0	71	1.09
684739--684780	18	2.3	18	91	0	66	7	23	0	69	1.13
684739--684785	18	2.7	17	80	6	58	6	23	0	70	1.10
691100--691129	15	2.0	15	93	0	51	53	6	3	36	1.44
692426--692468	3	14.7	3	90	4	70	62	0	0	37	0.95
692425--692462	20	1.9	20	100	0	76	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
694230--694659	36	11.8	36	79	15	408	43	3	6	45	1.48
694439--694506	28	2.5	28	83	6	79	44	5	4	45	1.48
694464--694643	78	2.3	76	85	9	229	44	3	5	47	1.41
694465--694564	39	2.7	35	84	10	69	45	3	5	47	1.40
694672--694699	3	9.3	3	100	0	56	32	0	0	67	0.91
695210--695245	18	1.9	19	88	5	56	36	25	30	8	1.85
695693--695734	11	3.7	11	81	12	50	21	2	0	76	0.90
695740--695816	40	1.9	41	82	12	97	11	3	7	76	1.13
695793--695846	12	4.9	11	72	22	51	22	3	1	72	1.10
695999--696037	19	2.1	19	90	4	62	17	0	2	79	0.84
696131--696160	13	2.3	13	94	0	51	30	0	0	70	0.88
701297--701372	35	2.2	35	92	0	125	39	23	1	35	1.63
701769--702015	129	1.9	130	90	0	397	36	15	12	35	1.85
702342--702404	28	2.3	27	78	8	63	46	1	3	49	1.27
702484--702517	16	2.0	18	88	11	54	64	5	2	26	1.30
707296--707359	2	32.0	2	100	0	128	50	0	0	50	1.00
711486--711512	3	9.0	3	100	0	54	33	0	0	66	0.92
712827--712875	21	2.3	21	96	0	89	46	12	12	28	1.77
713035--713062	2	14.0	2	100	0	56	50	0	0	50	1.00
725321--725696	190	2.0	189	85	2	504	39	6	9	44	1.62
727597--727625	12	2.4	12	100	0	58	0	41	31	27	1.56
735679--735781	30	3.4	30	89	2	136	31	25	21	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
735682--735806	30	4.1	30	86	2	135	32	25	21	20	1.98
735754--735831	31	2.5	31	85	4	95	34	23	20	21	1.97
736327--736359	2	16.5	2	100	0	66	48	0	0	51	1.00
736916--736960	21	2.1	21	87	0	63	15	24	28	31	1.96
743706--743796	42	2.2	42	90	4	139	19	12	17	50	1.77
744000--744070	22	3.3	21	76	19	67	46	1	0	52	1.09
744031--744078	22	2.2	22	84	0	60	50	2	0	47	1.12
744169--744238	27	2.6	27	80	14	83	51	1	1	45	1.18
744212--744333	33	3.8	33	67	26	86	50	4	0	45	1.26
744213--744284	23	3.1	22	78	7	63	51	2	1	44	1.24
747881--749144	630	2.0	630	92	0	2091	32	20	17	30	1.95
756296--756773	80	6.0	80	93	0	809	25	24	21	28	1.99
758306--758358	26	2.0	26	92	0	88	30	11	20	37	1.88
765491--765545	31	1.9	26	100	0	65	18	20	29	32	1.96
767459--767568	52	2.2	50	93	3	184	36	12	21	29	1.91
768006--768074	24	2.9	24	80	0	84	24	11	15	47	1.79
785976--786024	26	1.9	25	87	4	71	46	2	12	38	1.53
788315--788387	18	3.9	18	75	7	74	20	21	31	26	1.98
791331--791363	3	11.3	3	93	6	59	69	0	0	30	0.88
792935--792994	17	3.2	17	81	11	57	10	11	5	73	1.24
795429--795492	24	2.7	24	80	0	65	51	14	25	9	1.71
803902--803942	17	2.4	17	100	0	82	29	19	24	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
813286--813321	2	18.0	2	88	0	54	0	44	5	50	1.25
816631--816661	15	2.1	15	93	0	53	58	3	0	38	1.15
818063--818167	36	2.9	36	88	4	149	19	17	19	44	1.87
828740--828780	21	2.0	20	86	9	57	43	0	29	26	1.55
843995--844074	23	3.7	22	75	14	69	23	30	25	21	1.99
843995--844053	23	2.6	22	86	2	73	23	28	25	22	1.99
852253--852390	60	2.3	60	81	5	172	36	16	11	34	1.85
852918--852949	13	2.5	13	100	0	64	34	9	25	31	1.87
857546--857625	18	4.4	18	77	3	81	27	22	16	33	1.95
862786--862831	24	2.0	23	84	16	60	32	17	6	43	1.75
863523--863763	29	8.3	29	79	9	233	51	9	7	31	1.62
863523--863706	87	2.1	87	88	4	273	50	9	8	31	1.65
865633--867357	4	433.8	4	96	1	3128	48	25	1	24	1.59
867798--867846	2	24.5	2	100	0	98	48	0	0	51	1.00
869176--869219	22	2.0	23	81	4	54	34	2	4	59	1.30
874690--874754	32	1.9	32	82	14	78	55	6	3	35	1.40
877599--877636	16	2.4	16	90	0	58	31	15	5	47	1.68
880957--881037	41	2.0	41	95	0	144	29	14	27	28	1.95
882760--882821	23	2.7	23	84	0	70	22	24	22	30	1.99
882781--882826	23	2.0	23	86	0	65	23	21	26	28	1.99
883102--883139	19	2.0	19	85	10	51	26	5	21	47	1.71
885774--885819	22	2.1	22	83	0	56	36	19	21	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
892116--892150	10	3.5	10	92	0	61	37	8	34	20	1.83
895046--895105	18	3.0	21	80	14	81	28	31	21	18	1.97
895922--895959	20	1.9	20	89	10	60	23	23	21	31	1.98
896096--896149	21	2.6	21	100	0	108	33	22	22	22	1.97
900097--900122	2	13.0	2	100	0	52	50	0	0	50	1.00
900200--900257	20	2.7	20	86	10	71	24	22	24	29	1.99
905990--906275	12	20.6	13	64	24	79	73	1	7	17	1.16
906013--906087	32	2.4	29	85	12	89	74	0	8	17	1.04
906113--906183	5	14.6	5	72	21	53	74	2	0	22	0.94
906100--906275	23	8.2	21	68	18	87	73	2	5	18	1.14
906099--906190	15	6.4	14	71	16	55	76	3	2	18	1.03
906076--906275	35	5.3	37	72	12	142	73	2	6	17	1.16
906849--906895	24	2.0	24	82	0	58	72	0	6	21	1.07
906848--906921	34	2.2	34	80	2	78	67	1	9	21	1.27
907973--908054	43	1.9	43	84	0	110	47	8	13	30	1.72
908689--909484	84	9.5	84	78	3	726	26	19	22	31	1.98
908690--909484	168	4.7	169	85	1	990	26	19	22	31	1.98
911060--911255	95	2.1	94	86	5	279	32	18	16	32	1.94
914717--914908	4	46.8	4	67	20	69	70	2	7	19	1.21
914808--914832	13	1.9	13	100	0	50	80	0	4	16	0.87
914874--914961	45	2.0	45	84	4	115	70	0	7	21	1.12
915291--915341	3	17.3	3	91	4	86	66	0	1	31	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
916646--916730	43	2.0	43	83	0	107	49	8	10	31	1.67
930083--930160	3	27.0	3	75	12	74	39	0	1	58	1.06
930083--930160	24	3.1	25	77	15	90	39	0	1	58	1.06
935994--936025	11	2.8	12	90	9	57	75	0	25	0	0.81
935998--936028	11	2.8	11	100	0	62	77	0	22	0	0.77
935994--936042	18	2.6	18	78	18	55	75	0	24	0	0.80
938450--938512	31	2.0	31	96	0	117	34	19	14	31	1.91
940754--940808	22	2.5	22	93	0	101	34	10	14	40	1.81
941322--941819	170	3.0	167	93	2	829	35	13	12	38	1.83
941822--942531	76	9.4	76	95	0	1212	22	19	22	35	1.96

Tables:   1   2   3   4   5   6   7   8   9