genome.fa.s7883.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007883.1 Hibiscus syriacus cultivar Beakdansim tig00110263_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1590433

Tables:   1   2   3   4   5   6   7   8   9   

This is table  7  of  9  ( 970 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1161461--1161555	19	4.9	19	80	13	95	28	27	27	16	1.97
1161462--1161554	9	9.7	9	79	11	87	29	27	26	16	1.97
1161469--1161555	29	3.0	28	80	11	61	29	26	26	17	1.97
1168705--1168735	7	4.4	7	100	0	62	25	29	29	16	1.96
1168732--1168811	5	14.8	5	75	14	70	8	22	50	18	1.74
1168725--1168811	22	4.0	22	96	0	165	10	22	48	18	1.78
1168813--1168907	19	4.9	19	80	13	95	28	27	27	16	1.97
1168814--1168906	9	9.7	9	79	11	87	29	27	26	16	1.97
1168821--1168907	29	3.0	28	80	11	61	29	26	26	17	1.97
1176103--1176196	19	4.8	19	80	13	93	28	27	27	15	1.97
1176104--1176196	9	9.7	9	79	11	87	29	27	26	16	1.97
1176105--1176196	29	3.2	28	79	14	98	28	28	27	16	1.97
1182445--1182519	38	1.9	39	83	2	98	40	6	4	49	1.48
1182506--1182555	2	25.0	2	91	0	82	54	0	0	46	1.00
1190547--1190582	16	2.2	16	90	0	54	38	11	0	50	1.38
1193050--1193137	23	3.8	23	83	8	115	12	13	17	56	1.67
1194512--1194557	14	3.1	14	87	6	65	54	17	13	15	1.71
1197870--1197943	29	2.5	30	84	8	89	51	1	9	37	1.43
1200112--1200141	16	1.9	15	93	6	51	50	0	10	40	1.36
1200210--1200268	2	29.5	2	92	0	100	54	0	0	45	0.99
1200946--1201028	35	2.4	35	89	0	130	49	9	13	27	1.73
1216834--1216892	23	2.6	23	88	0	91	27	27	27	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1232775--1232866	46	2.0	46	93	4	159	30	10	26	32	1.90
1233566--1233634	34	2.0	34	85	0	93	52	4	14	28	1.61
1240480--1240529	22	2.3	22	75	0	55	58	16	4	22	1.55
1241731--1241755	12	2.1	12	100	0	50	16	8	32	44	1.76
1242133--1242217	43	2.0	43	81	4	100	35	20	15	29	1.93
1242251--1242584	162	2.1	162	83	2	420	29	17	14	38	1.90
1242450--1244136	124	13.1	124	75	11	1050	26	18	16	37	1.93
1243116--1243635	139	3.7	138	87	1	727	25	19	18	36	1.94
1243528--1243743	113	1.9	113	86	0	306	25	19	17	37	1.93
1243246--1244325	391	2.7	394	82	2	1299	26	18	17	36	1.93
1243389--1243887	252	2.0	252	91	1	804	26	17	17	38	1.92
1243636--1244310	139	5.0	139	77	8	627	27	19	16	36	1.93
1244347--1244549	38	5.3	38	68	13	141	38	12	17	31	1.86
1244335--1244549	74	2.9	74	79	9	245	38	11	17	33	1.86
1250238--1250291	22	2.5	22	100	0	108	24	25	25	24	2.00
1253707--1253942	4	59.5	4	94	1	377	25	3	24	46	1.69
1255587--1255639	27	2.0	27	100	0	106	18	13	26	41	1.87
1261037--1261081	23	2.0	23	90	0	72	62	0	4	33	1.15
1261363--1261693	66	5.0	66	89	1	477	38	13	17	30	1.88
1261363--1261694	131	2.5	131	87	1	486	38	13	17	30	1.88
1261660--1261730	37	1.9	37	94	0	124	33	9	18	38	1.84
1261594--1261796	103	2.0	103	94	0	352	38	12	17	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1261697--1261862	66	2.5	66	94	0	287	38	13	18	29	1.89
1261529--1261885	169	2.1	169	95	0	635	38	12	17	30	1.87
1262157--1262227	37	1.9	37	97	0	133	42	9	15	32	1.80
1269585--1269653	3	23.3	3	86	8	97	65	0	2	31	1.08
1279640--1279700	25	2.5	24	78	10	61	62	0	0	37	0.96
1279628--1279710	32	2.5	34	88	7	134	59	0	0	40	0.98
1280926--1280969	19	2.3	19	88	0	61	29	34	11	25	1.91
1280935--1280971	19	1.9	19	100	0	74	27	29	10	32	1.90
1282523--1282583	25	2.4	25	79	15	65	40	0	1	57	1.08
1282910--1282942	10	3.0	11	86	13	50	9	0	9	81	0.87
1283200--1283230	15	2.1	15	93	0	53	77	6	0	16	0.97
1284679--1284723	3	15.0	3	100	0	90	66	0	0	33	0.92
1287749--1287795	20	2.3	20	85	0	58	36	14	12	36	1.85
1291070--1291107	20	1.9	20	94	0	67	52	0	0	47	1.00
1291105--1291154	17	3.1	16	80	11	57	66	2	0	32	1.03
1291437--1291519	31	2.7	30	84	1	103	42	7	12	38	1.70
1294951--1295048	34	3.0	33	88	7	139	32	7	15	44	1.73
1295296--1295343	21	2.3	21	88	0	69	25	22	25	27	2.00
1295308--1295348	21	2.0	21	95	0	73	19	21	24	34	1.97
1295526--1295573	16	3.0	16	84	0	69	27	16	12	43	1.84
1295519--1295574	16	3.6	15	79	9	67	30	14	12	42	1.82
1295658--1295689	16	2.0	17	88	11	50	43	21	21	12	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1302614--1302686	37	2.0	36	89	5	112	47	0	2	49	1.15
1304790--1304829	21	2.0	19	85	9	53	57	0	2	40	1.12
1304845--1304912	17	4.0	17	78	14	61	44	0	0	55	0.99
1306706--1306770	32	2.0	32	91	5	105	41	6	7	44	1.58
1306705--1306757	16	3.3	16	71	10	54	43	5	9	41	1.61
1308264--1308406	65	2.2	64	82	7	173	29	22	20	27	1.98
1308384--1308426	19	2.4	19	84	7	54	23	27	20	27	1.99
1308938--1309097	65	2.5	66	86	5	211	30	22	18	28	1.97
1310533--1310588	27	2.1	27	100	0	112	35	17	17	28	1.93
1314709--1314788	23	3.6	22	81	5	99	23	26	25	25	2.00
1314709--1314788	21	3.7	21	78	8	97	23	26	25	25	2.00
1317576--1317634	20	3.0	20	89	0	91	25	23	15	35	1.94
1319899--1319932	13	2.5	13	90	4	50	61	0	2	35	1.11
1321466--1321576	23	4.9	23	78	10	122	29	25	22	22	1.99
1321704--1321737	15	2.3	15	90	5	52	26	26	5	41	1.78
1322378--1322524	55	2.7	55	88	2	215	31	21	18	29	1.97
1326905--1326994	21	4.2	21	76	16	94	36	26	15	21	1.93
1327100--1327133	15	2.3	15	90	5	52	26	26	5	41	1.78
1327773--1327919	55	2.7	55	88	0	213	31	23	17	28	1.96
1331480--1331580	49	2.1	49	85	7	134	70	15	11	1	1.26
1334044--1334079	17	2.2	17	90	5	56	36	13	13	36	1.85
1338210--1338268	4	14.0	4	81	13	66	47	3	0	49	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1338190--1338279	32	2.8	33	85	13	116	47	6	0	45	1.29
1340040--1340065	12	2.2	12	100	0	52	61	0	7	30	1.24
1341066--1341126	29	2.0	31	84	9	81	42	32	0	24	1.55
1342033--1342241	34	6.1	35	75	13	186	44	4	7	44	1.52
1342039--1342304	34	8.2	29	71	20	138	44	4	7	43	1.51
1342208--1342270	28	2.2	28	88	2	90	46	4	6	42	1.50
1342037--1342316	98	2.8	97	79	11	302	43	3	7	44	1.50
1342324--1342381	5	10.8	5	75	14	53	22	3	0	74	0.97
1342324--1342403	25	3.2	25	81	10	76	22	5	0	72	1.04
1348985--1349704	244	2.9	244	83	7	888	30	25	20	24	1.99
1349004--1349704	81	8.6	80	75	8	540	29	25	19	24	1.98
1349328--1349707	164	2.3	164	86	4	507	31	26	18	23	1.98
1349786--1349995	84	2.5	83	86	3	291	30	26	18	24	1.98
1349786--1350022	84	2.9	83	84	3	228	32	25	18	23	1.97
1350563--1350903	34	10.1	37	72	18	191	43	3	7	44	1.50
1350563--1350843	34	8.2	36	75	16	192	43	3	8	44	1.51
1350648--1350907	31	8.1	31	74	16	178	43	3	7	45	1.49
1350647--1350885	97	2.5	93	77	12	236	44	3	7	43	1.50
1350647--1350859	33	6.7	29	71	20	135	43	3	8	44	1.52
1350811--1350872	29	2.2	29	88	5	92	45	3	6	45	1.45
1350958--1350997	1	40.0	1	84	0	53	7	0	0	92	0.38
1350958--1350997	12	3.4	12	89	3	64	7	0	0	92	0.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1350929--1350996	29	2.3	30	87	2	93	13	2	0	83	0.75
1352305--1352381	16	4.3	17	71	23	52	20	5	2	71	1.18
1355157--1355186	14	2.1	14	93	0	51	50	0	0	50	1.00
1356083--1356232	58	2.6	58	96	2	275	38	14	16	32	1.88
1357322--1357400	35	2.2	34	84	10	97	44	1	3	50	1.28
1357322--1357400	36	2.2	35	84	10	99	44	1	3	50	1.28
1357374--1357422	23	2.1	24	85	11	75	42	0	4	53	1.20
1358902--1358965	23	2.8	22	90	4	92	28	26	25	20	1.99
1358981--1359301	103	3.1	103	94	0	561	37	23	12	25	1.91
1365142--1365205	23	2.8	22	83	4	74	26	23	26	23	2.00

Tables:   1   2   3   4   5   6   7   8   9