genome.fa.s7886.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007886.1 Hibiscus syriacus cultivar Beakdansim tig00110266_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1254954

Tables:   1   2   3   4   5   6   7   

This is table  1  of  7  ( 784 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1960--2011	26	2.1	26	85	7	72	40	23	0	36	1.55
10539--10588	3	16.7	3	91	0	82	66	4	0	30	1.10
17904--17989	43	2.0	43	86	0	118	27	23	9	39	1.85
23150--23180	16	1.9	16	93	0	53	41	12	12	32	1.81
28271--28363	21	4.5	21	75	4	91	39	17	24	18	1.91
28271--28363	41	2.3	41	96	0	177	39	17	24	18	1.91
28290--28424	41	3.3	41	81	6	123	37	20	21	20	1.94
28352--28466	20	5.7	20	82	6	115	31	26	18	24	1.97
28349--28486	41	3.4	41	79	6	154	34	24	17	23	1.96
28960--28997	20	1.9	20	88	0	58	13	15	21	50	1.78
30316--30361	18	2.6	18	89	0	74	28	43	15	13	1.83
30843--30909	20	3.4	20	81	2	73	38	23	22	14	1.92
30898--30955	14	3.9	14	79	16	71	48	25	17	8	1.75
30882--30972	32	2.8	33	93	3	157	48	23	17	10	1.79
30882--30977	19	5.7	18	70	20	73	46	22	18	11	1.81
30989--31046	14	3.9	14	79	16	62	10	17	24	48	1.78
30984--31062	32	2.4	33	93	2	133	11	18	22	46	1.81
31003--31121	20	6.4	19	76	11	97	13	20	23	42	1.87
32968--33002	13	2.6	14	90	4	54	28	0	22	48	1.51
33109--33162	14	3.5	14	77	22	63	48	20	20	11	1.80
33090--33167	33	2.4	33	91	0	120	42	21	23	12	1.87
33186--33243	20	2.9	20	97	0	107	15	22	24	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34307--34361	24	2.3	24	87	0	74	27	16	18	38	1.92
34535--34559	12	2.1	12	100	0	50	72	0	28	0	0.86
36263--36389	33	3.8	33	89	4	202	44	19	22	14	1.86
36263--36393	19	7.7	19	66	23	94	44	19	22	13	1.86
36262--36390	66	2.0	66	96	0	240	43	20	21	14	1.87
36418--36465	20	2.5	20	93	3	80	12	20	20	45	1.83
37998--38077	42	1.9	42	84	0	106	22	17	38	21	1.93
40081--40143	20	3.2	20	80	8	74	44	17	22	15	1.86
40128--40164	14	2.6	14	91	0	56	43	24	21	10	1.84
40079--40238	19	9.1	19	72	18	98	43	21	22	12	1.86
40234--40277	18	2.4	19	88	7	72	6	15	25	52	1.68
40807--40856	20	2.5	20	93	0	82	26	20	28	26	1.99
40868--40921	20	2.7	20	97	0	99	25	18	24	31	1.97
40808--40924	61	1.9	61	83	0	153	23	17	24	34	1.96
40808--40942	61	2.2	61	80	2	146	22	19	24	33	1.97
42330--42374	15	3.0	15	100	0	90	13	20	60	6	1.55
53696--53750	20	2.8	20	83	2	58	34	12	3	49	1.59
56311--56368	30	1.9	30	89	0	89	18	17	25	37	1.93
56692--56746	27	2.1	27	86	6	78	47	0	16	36	1.47
56832--56889	26	2.2	26	93	0	98	34	12	6	46	1.68
57927--57960	13	2.8	12	91	8	52	14	2	41	41	1.61
63585--63618	14	2.5	13	86	13	50	32	0	23	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70505--70561	25	2.3	25	82	14	73	61	21	5	12	1.50
71178--71233	19	3.0	18	78	14	60	26	3	0	69	1.04
84656--84976	79	4.1	79	88	0	453	28	22	11	37	1.90
84734--84968	45	5.7	44	68	21	168	28	24	12	34	1.92
84669--84976	158	1.9	158	91	1	501	28	23	11	36	1.90
85385--85437	22	2.5	22	81	6	65	32	26	13	28	1.93
85461--85512	20	2.6	20	87	6	70	19	28	17	34	1.94
86334--86416	25	3.3	24	66	21	62	28	10	15	44	1.80
86359--86437	25	3.1	26	65	24	69	27	8	17	45	1.78
86319--86437	51	2.4	50	92	2	202	26	12	17	43	1.85
87087--87261	89	2.0	89	96	0	323	42	7	10	39	1.68
88095--88195	45	2.2	45	85	0	130	9	16	34	38	1.82
88224--88297	3	26.0	3	89	10	120	67	0	0	32	0.91
90190--90264	33	2.3	33	86	6	100	48	5	4	42	1.44
91715--91747	6	5.7	6	96	3	59	0	0	12	87	0.53
94994--95031	14	2.7	14	84	11	51	21	10	28	39	1.86
96830--97076	4	59.8	4	71	17	71	69	0	5	24	1.13
96921--97007	13	6.3	13	72	19	52	78	0	3	18	0.89
96921--97045	47	2.6	48	82	12	141	73	0	3	23	0.97
97018--97066	2	24.5	2	79	8	55	57	0	2	40	1.10
96924--97052	51	2.5	50	80	15	140	72	0	3	24	1.02
97011--97151	75	1.9	75	80	13	168	63	1	2	32	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98342--98572	36	6.5	37	73	12	198	38	12	20	27	1.90
98373--98559	102	1.8	102	82	6	245	37	11	21	29	1.89
98646--98722	37	2.1	37	85	7	104	46	12	16	23	1.82
98624--98848	102	2.2	102	88	2	328	36	11	18	33	1.87
98738--98824	37	2.4	36	84	1	102	39	12	20	27	1.89
98759--98931	87	2.0	87	93	2	294	35	11	19	33	1.87
98655--99040	189	2.0	189	83	3	474	38	11	18	31	1.86
99194--99510	106	3.0	106	86	1	422	23	19	22	34	1.97
100091--100199	32	3.4	32	83	3	121	37	17	13	31	1.89
101328--101380	27	2.0	26	92	3	88	5	15	1	77	1.04
101329--101378	13	3.7	14	86	7	68	4	16	2	78	1.00
104443--104618	5	34.6	5	73	19	50	73	0	7	18	1.09
104516--104666	48	3.2	48	75	15	113	74	0	4	21	1.00
104545--104632	26	3.3	25	75	10	86	79	0	4	15	0.89
104533--104619	9	10.0	8	78	14	75	79	0	3	17	0.87
104607--104746	40	3.5	40	78	12	160	65	1	2	30	1.13
104722--104791	24	2.9	24	79	8	88	67	2	4	25	1.23
110209--110241	12	2.8	12	95	0	57	27	51	12	9	1.69
111665--111692	2	14.0	2	100	0	56	50	0	0	50	1.00
114310--114347	2	19.0	2	100	0	76	50	0	0	50	1.00
115279--115352	32	2.2	34	80	4	80	31	17	20	31	1.96
116301--116342	21	2.0	21	86	9	59	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118154--118197	21	2.1	21	83	8	54	25	29	27	18	1.98
126294--126379	27	3.2	27	67	23	81	33	26	16	23	1.95
126275--126427	54	2.8	54	91	0	234	34	22	17	24	1.96
126985--127016	2	16.0	2	93	0	55	50	3	46	0	1.17
130969--131006	18	2.1	18	100	0	76	42	10	10	36	1.74
135343--135367	12	2.1	12	100	0	50	16	16	36	32	1.90
135654--135705	3	17.3	3	84	15	72	69	0	0	30	0.89
135656--135706	12	4.2	13	90	9	81	70	0	0	29	0.87
135646--135708	9	7.0	9	77	13	58	69	1	0	28	0.97
135980--136257	43	6.5	43	73	13	218	23	19	30	25	1.98
135980--136165	83	2.2	83	97	0	345	23	19	31	25	1.98
136021--136163	40	3.5	40	75	12	164	23	20	30	25	1.98
135980--136214	83	2.8	83	88	3	301	24	19	30	25	1.98
135901--136303	212	1.9	212	95	0	725	24	19	30	25	1.98
136810--136884	31	2.4	30	82	8	80	40	13	14	32	1.85
136917--136996	40	2.0	40	87	4	117	37	11	20	31	1.87
136978--137102	64	2.0	64	88	1	189	44	11	14	30	1.80
137001--137223	120	1.9	119	81	8	274	43	13	13	30	1.82
137270--137494	67	3.5	64	84	5	265	45	12	11	30	1.77
137335--137461	37	3.6	37	68	16	108	45	11	11	31	1.76
137324--137494	67	2.6	65	89	3	270	46	12	10	30	1.75
137439--137507	28	2.5	28	90	4	104	43	14	7	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137593--137686	27	3.5	25	79	12	89	48	14	9	26	1.75
137928--138025	36	2.8	35	82	3	126	34	12	18	34	1.88
137929--138047	36	3.4	36	81	6	120	36	12	21	30	1.90
138205--138286	36	2.3	36	78	4	94	31	12	19	36	1.89
138205--138299	36	2.6	36	78	3	93	35	11	17	34	1.86
138389--138506	36	3.3	35	82	9	148	36	12	16	34	1.86
139052--139089	4	10.0	4	83	11	53	26	0	23	50	1.50
140268--140308	14	3.0	14	79	13	50	2	21	4	70	1.18
142124--142185	32	2.0	32	96	3	117	61	9	14	14	1.57
145940--146001	3	19.3	3	84	15	72	67	0	0	32	0.91

Tables:   1   2   3   4   5   6   7