genome.fa.s7886.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007886.1 Hibiscus syriacus cultivar Beakdansim tig00110266_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1254954

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 784 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145940--146001	19	3.2	19	93	6	99	67	0	0	32	0.91
145942--146002	10	6.2	10	88	11	99	68	0	0	31	0.89
145940--146002	16	3.9	16	80	16	76	68	0	0	31	0.90
152672--152708	4	9.2	4	100	0	74	27	0	48	24	1.51
158149--158189	10	4.4	10	79	14	52	63	0	0	36	0.95
159168--159241	9	8.0	9	74	5	58	77	1	5	16	1.03
159155--159201	17	2.5	19	80	13	53	76	0	4	19	0.95
159155--159201	18	2.5	17	86	13	58	76	0	4	19	0.95
159171--159267	47	2.0	49	81	15	114	74	1	5	19	1.07
159092--159286	51	3.8	50	76	14	125	71	0	7	21	1.13
159238--159375	34	3.8	35	78	20	126	63	1	2	31	1.18
159236--159343	36	3.0	35	84	9	121	64	0	2	31	1.14
160499--160582	35	2.5	34	90	3	125	32	8	17	41	1.80
160600--160709	36	3.1	36	77	5	125	39	14	21	24	1.91
160609--160698	34	2.6	35	83	3	110	43	16	20	20	1.88
160767--161054	36	8.3	36	63	17	126	38	14	20	27	1.91
160743--161084	102	3.4	102	87	2	429	37	13	19	28	1.90
160865--160937	37	2.0	37	88	0	110	38	15	20	26	1.92
161232--161554	106	3.0	106	87	0	441	22	19	23	33	1.97
162132--162250	32	3.7	31	80	8	132	36	20	14	29	1.92
163291--163328	13	2.9	14	80	11	53	5	15	5	73	1.19
166388--166567	5	34.2	5	67	23	52	72	1	7	18	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
166385--166459	32	2.3	32	81	9	89	70	1	9	18	1.21
166480--166549	8	8.0	8	73	19	52	78	1	4	15	0.98
166475--166557	21	3.7	22	71	19	64	78	1	3	16	0.96
166471--166569	37	2.6	37	74	13	96	75	1	5	18	1.04
166482--166601	15	7.8	16	68	14	65	74	0	3	21	1.02
166388--166567	20	9.9	17	69	21	59	72	1	7	18	1.13
166476--166629	49	3.1	50	80	10	147	70	0	3	25	1.06
166396--166567	11	16.0	11	67	17	53	72	1	7	18	1.14
166452--166567	18	6.7	17	73	20	64	74	0	6	18	1.09
166544--166685	41	3.4	43	79	10	159	64	0	2	32	1.10
166544--166683	45	3.3	42	79	12	160	65	0	2	32	1.10
168101--168137	11	3.6	11	79	20	53	32	0	5	62	1.18
168092--168141	19	2.6	19	96	3	91	30	0	4	66	1.10
168323--168390	33	2.1	33	88	5	102	45	19	7	27	1.76
169391--169423	17	2.0	17	94	5	59	75	0	0	24	0.80
169469--169511	2	21.5	2	95	0	68	46	0	4	48	1.22
171067--171854	84	9.5	84	77	6	769	25	19	23	30	1.98
171068--171854	165	4.7	164	81	5	613	25	19	23	30	1.98
171001--171718	249	2.9	248	87	2	965	25	19	23	30	1.98
170996--171846	249	3.4	243	83	6	938	25	19	23	31	1.98
175821--175864	23	1.9	23	95	0	79	79	0	15	4	0.89
178678--178732	16	3.2	18	77	15	62	14	0	9	76	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179191--179454	131	2.0	131	84	5	347	34	16	15	33	1.91
180506--181359	45	19.0	45	82	2	894	41	19	15	23	1.89
181564--181601	19	2.0	20	94	5	69	39	0	26	34	1.57
182844--182869	3	8.7	3	100	0	52	0	30	0	69	0.89
182877--183061	1	185.0	1	70	0	127	14	0	0	85	0.60
182883--183072	7	26.9	7	95	4	337	14	1	0	84	0.69
186861--186893	16	2.0	17	94	5	59	54	12	3	30	1.52
186996--187045	2	25.0	2	100	0	100	50	0	0	50	1.00
188064--188098	18	1.9	18	94	0	61	17	0	5	77	0.96
188469--188535	31	2.2	31	88	0	107	25	29	10	34	1.89
189920--189996	31	2.5	30	85	4	109	25	24	12	36	1.92
190116--190162	24	2.0	23	84	15	62	44	19	10	25	1.82
195361--195485	2	62.5	2	91	0	205	48	2	1	48	1.24
197107--197147	16	2.6	16	96	0	73	43	4	4	46	1.46
200942--200972	3	10.3	3	100	0	62	67	0	0	32	0.91
201391--201488	21	4.7	20	73	7	70	32	13	14	39	1.84
201392--201474	42	2.0	43	83	11	109	31	13	15	39	1.86
204209--204280	36	2.0	36	100	0	144	16	22	22	38	1.93
204774--204828	21	2.6	21	79	0	65	27	16	12	43	1.84
205149--205210	31	2.0	31	87	0	88	38	8	19	33	1.81
206250--206299	22	2.3	22	100	0	100	28	16	20	36	1.93
215940--215972	5	6.6	5	100	0	66	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
217177--217375	45	4.4	45	88	3	285	31	21	8	39	1.82
217177--217375	91	2.2	89	87	5	285	31	21	8	39	1.82
217385--217427	20	2.0	22	91	8	72	55	20	9	13	1.66
239829--239863	18	1.9	18	94	0	61	31	25	8	34	1.86
247100--247175	3	23.3	3	72	19	55	60	2	3	32	1.29
247100--247169	26	2.6	26	84	6	86	60	2	4	32	1.31
247100--247175	10	8.1	10	72	19	56	60	2	3	32	1.29
249550--249583	16	2.1	17	88	5	52	44	17	0	38	1.49
250190--250256	22	3.0	22	80	4	71	32	26	19	20	1.97
250245--250337	21	4.4	21	74	8	91	37	21	16	24	1.93
250245--250337	42	2.2	42	86	0	132	37	21	16	24	1.93
256150--256217	33	2.1	33	86	5	93	14	35	19	30	1.92
258784--258830	24	1.9	25	91	4	78	29	25	23	21	1.99
259023--259093	31	2.3	30	90	2	106	33	25	2	38	1.71
259503--259545	21	2.0	21	86	0	59	16	25	27	30	1.97
260004--260106	3	34.0	3	98	1	197	66	0	33	0	0.92
262468--262623	64	2.4	64	82	6	165	33	20	19	26	1.97
263248--263308	23	2.7	23	84	0	86	19	26	26	27	1.99
268137--268236	50	2.0	50	100	0	200	36	18	18	28	1.94
269958--270002	23	2.0	23	86	0	63	20	26	26	26	1.99
274377--274418	22	1.9	22	85	0	57	33	26	19	21	1.97
276585--276644	2	30.0	2	100	0	120	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
279677--279718	22	1.9	22	85	0	57	33	26	19	21	1.97
297360--297401	22	1.9	22	85	9	59	38	0	33	28	1.58
298017--298141	55	2.3	55	92	0	205	27	20	23	29	1.98
298943--298991	18	2.7	18	93	0	80	18	22	32	26	1.97
301101--301173	22	3.3	22	90	5	103	23	13	27	35	1.92
304109--304151	2	21.5	2	90	0	68	44	0	4	51	1.22
316224--316274	20	2.5	20	83	0	66	29	21	9	39	1.85
330097--330139	2	20.0	2	90	9	59	46	0	6	46	1.30
339577--339615	2	20.0	2	94	5	71	48	0	0	51	1.00
344612--344642	2	15.5	2	93	0	53	48	0	3	48	1.17
345621--345680	23	2.7	22	84	5	77	15	25	26	33	1.95
350562--350593	2	16.0	2	100	0	64	50	0	0	50	1.00
350611--350668	21	2.8	21	81	0	71	20	18	24	36	1.95
354707--354749	13	3.5	13	75	12	54	53	2	4	39	1.34
354704--354777	24	3.2	24	94	3	125	55	2	5	36	1.37
365586--365654	23	3.0	23	83	8	95	27	26	26	20	1.99
366724--366769	20	2.3	20	92	0	83	21	28	0	50	1.49
370737--370785	3	16.7	3	95	4	91	67	0	0	32	0.91
377325--377409	35	2.5	31	80	12	89	44	2	8	44	1.46
377339--377522	71	2.5	71	76	16	173	45	4	8	41	1.55
377601--377638	5	7.8	5	88	2	51	21	10	0	68	1.19
377600--377642	10	4.4	10	91	2	70	20	9	0	69	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
377602--377642	15	2.7	15	88	0	64	19	9	0	70	1.14
378822--378876	8	7.0	8	75	17	53	21	5	0	72	1.04
382985--383033	24	2.0	24	84	11	64	75	6	4	14	1.14
386192--386219	2	14.0	2	100	0	56	50	0	0	50	1.00
387993--388040	15	3.2	15	80	11	53	45	18	6	29	1.74
390725--390790	30	2.2	31	83	8	82	21	16	19	42	1.89
391116--391172	25	2.3	24	80	14	62	49	1	10	38	1.48
396044--396120	21	3.5	22	81	13	88	24	24	25	24	2.00
396044--396119	23	3.4	23	84	8	88	25	25	26	23	2.00
401948--401977	13	2.2	14	94	5	53	10	13	23	53	1.69

Tables:   1   2   3   4   5   6   7