genome.fa.s7886.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007886.1 Hibiscus syriacus cultivar Beakdansim tig00110266_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1254954

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 784 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1121702--1121826	22	5.9	22	80	7	150	27	30	24	18	1.98
1121687--1121827	40	3.5	40	82	8	167	28	29	23	18	1.98
1121690--1121760	18	3.7	18	71	14	61	29	32	21	16	1.95
1130193--1130222	7	4.4	7	91	8	53	23	30	30	16	1.96
1130197--1130222	13	2.0	13	100	0	52	23	30	30	15	1.95
1130280--1130378	9	10.3	9	76	12	90	27	28	28	16	1.97
1130282--1130379	19	5.1	19	79	13	101	27	28	26	17	1.98
1130305--1130379	29	2.5	31	79	16	95	28	28	26	17	1.98
1141315--1141435	64	1.9	64	84	6	165	38	18	16	26	1.91
1141815--1141895	29	2.8	29	96	3	146	44	16	22	17	1.86
1141980--1142013	15	2.3	15	89	0	50	17	17	32	32	1.94
1143697--1143764	24	3.0	23	74	19	63	33	0	1	64	1.02
1143695--1143759	8	8.0	8	72	16	53	33	0	1	64	1.03
1143718--1143759	17	2.4	19	80	15	54	33	0	2	64	1.07
1143694--1143778	28	3.0	28	69	19	68	30	0	1	68	0.97
1146018--1146091	33	2.2	34	80	7	89	21	1	14	62	1.40
1146029--1146103	34	2.2	36	83	9	102	21	0	17	61	1.35
1148162--1148238	31	2.6	29	74	15	68	42	5	7	44	1.55
1153029--1153091	31	2.2	28	78	15	67	28	25	23	22	1.99
1153513--1153618	46	2.3	46	88	4	169	34	30	9	25	1.88
1155830--1155986	24	6.6	24	72	4	95	57	16	12	14	1.66
1155879--1155957	23	3.4	23	77	10	88	56	17	11	13	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1155945--1155991	24	2.0	24	100	0	94	59	21	8	10	1.57
1156156--1156209	24	2.2	24	83	6	74	57	14	9	18	1.64
1159878--1159937	27	2.2	27	96	0	111	46	3	8	41	1.50
1159891--1159939	13	3.7	13	72	5	53	48	4	10	36	1.56
1160202--1160237	17	2.1	17	89	5	54	77	2	0	19	0.88
1163748--1163776	6	5.0	6	95	4	51	34	13	0	51	1.42
1163748--1163796	18	2.9	17	77	22	50	34	12	0	53	1.39
1165517--1165649	70	1.9	70	98	0	257	42	9	16	31	1.79
1174120--1174213	20	4.6	21	81	7	88	38	24	9	27	1.86
1174168--1174232	20	3.3	20	82	8	71	33	23	10	32	1.89
1175125--1175176	24	2.2	23	83	6	68	21	19	17	42	1.89
1176759--1176828	6	11.7	6	89	0	86	20	12	28	38	1.89
1178763--1178812	25	2.0	25	88	0	73	28	6	20	46	1.74
1179206--1179242	18	2.1	18	89	0	56	32	5	10	51	1.60
1179198--1179250	24	2.2	24	86	0	70	35	3	13	47	1.61
1180122--1180157	18	2.0	18	94	0	63	55	22	2	19	1.56
1180375--1180440	20	3.3	20	93	0	114	18	16	25	39	1.91
1180499--1180646	64	2.3	64	92	1	244	52	17	2	28	1.56
1180628--1180661	14	2.5	14	90	4	52	52	17	0	29	1.45
1182030--1182111	21	3.9	21	68	0	74	26	21	31	19	1.97
1182022--1182103	42	2.0	42	85	4	112	26	20	34	18	1.96
1184233--1184279	19	2.5	19	80	10	60	48	21	14	14	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1184784--1184821	20	2.0	20	84	5	51	44	13	15	26	1.83
1184847--1184916	20	3.5	20	88	0	95	22	15	22	38	1.92
1188482--1188513	15	2.1	15	94	0	55	71	3	0	25	1.00
1194330--1194734	203	2.0	200	97	1	756	30	13	18	38	1.88
1199464--1199514	23	2.2	23	85	0	66	43	23	15	17	1.88
1200507--1200556	26	1.9	26	95	0	91	46	14	8	32	1.73
1208689--1208765	37	2.1	37	87	0	109	24	25	12	36	1.92
1209474--1209511	14	2.7	14	100	0	76	15	26	7	50	1.72
1211563--1211631	23	3.0	23	78	0	84	30	23	26	20	1.98
1223327--1223420	16	5.7	16	78	12	84	1	15	2	80	0.86
1223337--1223420	25	3.3	23	81	14	78	1	15	2	80	0.87
1223327--1223417	19	5.1	18	77	14	75	1	15	2	81	0.85
1223330--1223423	41	2.4	39	83	16	115	1	17	2	79	0.88
1223327--1223423	15	6.7	15	76	14	71	1	16	2	80	0.87
1223359--1223423	12	5.2	12	82	15	78	0	15	1	83	0.73
1233872--1233904	15	2.1	16	88	5	50	9	24	15	51	1.72
1234651--1234685	16	2.1	17	94	5	63	34	25	8	31	1.86
1250527--1250558	15	2.1	15	94	0	55	53	9	25	12	1.68
1251251--1251279	14	2.1	14	100	0	58	51	6	27	13	1.66
1251951--1251988	14	2.7	14	95	0	67	21	18	13	47	1.82

Tables:   1   2   3   4   5   6   7

The End!