genome.fa.s7886.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007886.1 Hibiscus syriacus cultivar Beakdansim tig00110266_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1254954

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 784 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
517034--517071	20	1.9	20	100	0	76	52	7	2	36	1.45
516917--517078	22	7.2	20	69	21	83	51	11	0	36	1.42
517117--517327	53	4.0	54	88	6	335	50	12	0	36	1.47
517220--517367	21	6.3	24	71	26	81	51	12	0	36	1.39
519792--519849	23	2.5	23	77	8	64	32	0	6	60	1.23
519837--519933	42	2.4	40	86	5	124	53	2	1	43	1.19
521102--521204	51	2.0	51	96	0	188	45	5	4	43	1.49
525108--525172	31	2.1	31	94	0	112	41	16	20	21	1.90
526633--526686	14	3.9	14	73	9	56	24	0	25	50	1.50
526632--526686	21	2.6	21	74	5	58	23	0	27	49	1.51
526633--526726	28	3.4	28	78	8	95	23	1	23	52	1.54
526655--526701	14	3.4	14	80	11	60	25	2	21	51	1.59
526676--526726	21	2.4	21	80	0	57	21	1	21	54	1.54
526662--526726	14	4.6	14	73	7	51	23	1	23	52	1.56
531786--532019	60	3.9	60	94	2	393	34	20	7	37	1.81
532684--532728	2	22.5	2	100	0	90	51	0	0	48	1.00
534238--534614	36	10.3	36	81	12	315	46	6	1	44	1.41
534244--534551	34	8.4	40	82	14	234	46	6	1	45	1.39
536437--536461	2	12.5	2	100	0	50	0	48	0	52	1.00
537679--537709	16	1.9	16	93	0	53	54	0	3	41	1.16
545998--546051	20	2.7	20	94	0	90	38	12	24	24	1.90
546098--546164	20	3.4	18	78	10	62	38	11	17	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
546090--546162	20	3.7	19	76	5	56	41	10	17	30	1.84
546313--546357	19	2.3	20	84	3	56	42	2	13	42	1.56
547538--547612	31	2.4	31	84	4	89	41	14	17	26	1.88
551314--551394	23	3.7	23	88	8	107	23	34	20	20	1.97
553046--553134	16	6.0	16	71	24	70	39	0	0	60	0.97
553058--553143	13	6.2	13	73	18	59	38	1	0	60	1.04
553586--553621	17	2.1	17	89	0	54	61	2	8	27	1.39
555387--555431	2	22.5	2	100	0	90	48	0	0	51	1.00
556895--556923	2	14.5	2	100	0	58	51	0	0	48	1.00
557085--557154	12	5.8	12	75	6	61	52	17	12	17	1.74
557084--557191	48	2.2	48	80	3	128	50	16	12	20	1.76
557083--557189	24	4.4	25	73	11	89	50	16	12	20	1.77
562797--563307	170	3.0	170	91	2	803	49	8	13	28	1.70
565253--565322	19	3.4	21	70	18	67	37	22	20	20	1.95
565249--565341	40	2.3	42	96	3	172	35	24	19	20	1.96
565274--565347	21	3.6	21	76	7	89	33	27	20	18	1.96
566669--566696	14	2.0	14	100	0	56	42	0	7	50	1.30
568971--569012	22	2.0	22	81	13	52	2	7	23	66	1.28
575044--575069	12	2.2	12	100	0	52	23	0	53	23	1.46
575050--575144	30	3.2	30	86	0	118	24	9	50	15	1.74
582461--582502	18	2.3	18	95	0	75	19	19	35	26	1.95
582461--582513	18	2.9	18	91	0	70	20	18	33	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
589985--590078	47	2.0	47	100	0	188	25	8	34	31	1.86
592554--592594	21	2.0	21	100	0	82	29	19	24	26	1.98
599747--599787	2	21.0	2	95	5	75	51	0	0	48	1.00
601183--601227	14	3.1	14	84	12	56	60	2	2	35	1.22
604810--604880	20	3.5	20	79	7	63	30	16	14	38	1.89
610345--610391	21	2.2	21	88	0	67	63	10	10	14	1.51
611028--611071	22	2.0	22	100	0	88	45	13	0	40	1.44
611104--611197	31	3.0	31	72	9	91	39	7	7	45	1.60
615251--615400	61	2.5	59	82	4	194	45	5	10	38	1.62
617558--617619	20	3.1	20	92	0	106	19	19	22	38	1.93
617504--617623	40	3.0	40	77	7	120	24	20	21	34	1.97
617807--617862	22	2.6	22	97	2	105	25	39	8	26	1.85
621105--621284	33	5.3	33	84	7	243	44	18	23	13	1.85
621105--621284	72	2.6	66	84	10	252	44	18	23	13	1.85
621206--621263	14	3.8	14	75	20	53	46	18	24	10	1.80
621078--621286	105	2.0	106	88	0	312	42	19	22	15	1.88
621284--621329	19	2.4	19	92	0	74	13	15	23	47	1.80
621301--621392	33	2.8	33	88	3	123	14	18	18	48	1.80
621332--621392	19	3.5	19	74	21	78	16	21	16	45	1.85
621499--621535	14	2.6	14	91	0	65	45	21	0	32	1.52
622884--622950	21	3.2	21	68	4	55	19	20	35	23	1.95
623288--623485	94	2.1	94	92	2	335	48	17	11	22	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
625188--625262	20	3.8	20	79	10	82	41	18	24	16	1.90
625179--625310	19	7.1	19	74	11	103	43	17	22	15	1.87
625337--625408	20	3.5	20	81	5	83	13	16	18	51	1.77
625965--626088	20	6.2	20	85	3	178	18	20	24	36	1.95
626085--626137	21	2.5	21	75	0	52	33	16	24	24	1.96
628658--628713	21	2.7	20	86	8	76	48	5	0	46	1.25
629373--629444	15	4.9	15	84	1	92	37	9	19	33	1.85
629654--629820	90	1.9	89	80	8	196	44	1	4	49	1.31
629838--629890	28	1.9	27	88	11	81	50	1	0	47	1.12
629828--629880	20	2.7	20	75	16	56	49	1	0	49	1.12
629837--630002	29	5.8	27	69	18	81	51	1	0	46	1.13
629836--629986	59	2.6	59	76	14	150	49	1	0	48	1.14
629836--629938	29	3.5	28	77	17	86	51	1	0	46	1.12
629954--629997	22	2.0	23	86	4	63	54	0	0	45	0.99
630190--630305	42	2.8	42	93	0	187	44	18	17	19	1.87
635919--636013	48	2.0	47	95	2	172	32	28	11	27	1.91
643485--643515	16	1.9	16	93	0	53	70	0	22	6	1.09
643973--644004	2	16.0	2	100	0	64	50	0	0	50	1.00
650980--651024	19	2.5	17	82	13	54	80	0	11	8	0.92
650992--651049	24	2.5	23	83	8	64	79	1	13	5	0.98
651016--651048	10	3.4	10	87	4	50	81	3	15	0	0.80
652080--652154	33	2.3	32	83	2	87	34	10	24	30	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
652431--652554	43	2.9	41	82	7	149	29	29	20	20	1.98
652937--653010	37	2.0	37	91	0	121	41	18	17	21	1.90
653012--653310	110	2.7	110	88	2	456	28	23	19	28	1.98
653453--653482	3	10.3	3	92	7	53	30	0	0	70	0.88
655088--655133	2	23.0	2	100	0	92	50	0	0	50	1.00
678952--679024	36	2.0	36	84	10	96	47	5	1	45	1.34
679330--679383	23	2.3	23	87	0	72	24	18	24	33	1.97
686925--686961	17	2.2	17	90	0	56	27	0	0	72	0.84
691253--691315	32	2.0	30	85	11	83	42	4	7	44	1.54
693865--693914	20	2.4	19	81	18	55	56	4	2	38	1.30
693879--693936	21	2.8	22	87	7	77	60	3	0	36	1.14
710845--710908	32	2.0	32	100	0	128	18	18	25	37	1.94
718959--718992	9	3.7	9	96	4	59	32	0	0	67	0.91
719395--719450	25	2.3	25	87	6	80	55	5	30	8	1.53
720773--721156	192	2.0	192	98	0	741	34	19	10	35	1.86
727348--727418	20	3.5	20	100	0	142	43	15	19	21	1.87
728722--728808	25	3.6	25	76	7	90	35	20	1	42	1.60
730443--730480	3	12.7	3	100	0	76	31	0	0	68	0.90
730725--730762	20	1.9	20	89	10	60	65	15	0	18	1.27
731794--731868	33	2.3	32	93	2	123	30	5	8	56	1.51
732090--732120	14	2.1	15	94	5	55	25	6	0	67	1.14
736222--736273	27	1.9	27	100	0	104	19	32	32	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
736623--736664	18	2.3	18	95	0	75	30	33	11	23	1.91
739497--739632	57	2.4	57	87	8	188	48	25	8	16	1.75
741560--741602	19	2.5	17	82	14	52	27	13	4	53	1.60
742704--742755	21	2.5	21	81	3	61	38	19	25	17	1.93
742741--742818	41	1.9	41	89	0	120	38	23	15	23	1.92
742744--742837	20	4.7	20	80	7	91	32	25	17	24	1.96
743025--743068	22	2.0	22	95	0	79	20	45	15	18	1.85
744598--744642	18	2.5	18	85	0	63	26	46	15	11	1.79
745107--745208	19	5.6	19	74	13	70	40	23	21	14	1.90
745220--745272	14	3.9	14	95	5	99	7	15	26	50	1.70

Tables:   1   2   3   4   5   6   7