genome.fa.s7886.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007886.1 Hibiscus syriacus cultivar Beakdansim tig00110266_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1254954

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 784 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404542--404570	13	2.2	13	100	0	58	41	6	31	20	1.79
408350--408382	12	2.8	12	86	4	50	72	0	0	27	0.85
408727--408769	2	22.0	2	95	4	79	51	0	0	48	1.00
409551--409624	21	3.6	21	72	17	82	14	20	27	37	1.92
409575--409644	20	3.5	20	70	18	72	12	22	24	40	1.89
409554--409647	41	2.3	41	100	0	188	14	21	25	38	1.92
409554--409665	41	2.7	41	91	5	156	16	20	25	36	1.94
409792--409822	6	5.2	6	100	0	62	35	32	0	32	1.58
409819--409867	6	8.2	6	100	0	98	34	48	16	0	1.46
409792--409828	18	2.1	18	89	0	56	35	35	2	27	1.71
410356--410392	6	6.2	6	100	0	74	0	16	48	35	1.46
410449--410527	41	1.9	41	92	0	131	41	18	18	20	1.90
411309--411571	20	13.2	20	78	14	233	37	25	15	21	1.93
412428--412472	21	2.1	21	87	0	63	31	28	24	15	1.96
412825--412864	18	2.4	16	87	8	53	37	5	17	40	1.72
412825--412865	16	2.4	18	88	8	59	36	4	17	41	1.71
413074--413120	23	2.0	24	91	4	78	44	0	19	36	1.51
413298--413484	31	6.0	31	93	1	313	21	19	21	37	1.95
416328--416372	21	2.1	21	87	0	63	31	28	24	15	1.96
416963--417009	23	2.0	24	91	4	78	44	0	19	36	1.51
417187--417373	31	6.0	31	92	1	304	21	19	20	37	1.94
420611--420686	21	3.6	21	75	7	82	23	35	19	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
421215--421241	13	2.1	13	100	0	54	37	7	40	14	1.74
422118--422151	14	2.4	14	95	0	59	32	0	17	50	1.47
422277--422328	20	2.6	20	90	0	86	42	25	13	19	1.87
422573--422659	39	2.2	39	95	0	156	18	14	19	47	1.83
422970--423006	18	2.1	18	89	0	56	51	10	5	32	1.60
423434--423569	20	7.1	20	76	9	122	42	20	18	18	1.89
423886--423921	18	2.0	18	88	0	54	13	5	25	55	1.60
426183--426236	24	2.2	24	83	0	63	38	22	16	22	1.93
426362--426395	12	2.8	12	90	0	50	14	0	29	55	1.40
426948--426986	15	2.5	15	83	4	51	66	0	5	28	1.12
427143--427193	19	2.5	21	90	6	79	25	13	23	37	1.92
427143--427249	20	5.4	19	80	9	81	22	15	23	38	1.93
427223--427289	20	3.3	20	89	0	98	25	17	20	35	1.95
429080--429172	45	2.1	45	95	0	168	18	45	9	26	1.80
432259--432303	23	2.0	23	86	8	65	66	0	0	33	0.92
433000--433060	25	2.5	24	82	12	72	57	4	0	37	1.20
434363--434391	15	1.9	15	100	0	58	41	6	13	37	1.72
440205--440237	16	2.1	16	100	0	66	57	24	12	6	1.57
440303--440393	10	9.7	10	67	27	58	57	20	12	9	1.63
440307--440387	16	5.1	16	93	0	144	56	22	12	8	1.62
441138--441193	14	4.3	14	76	17	66	53	23	12	10	1.69
441118--441192	24	3.1	24	86	3	98	56	20	10	13	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442451--442608	21	7.8	20	71	7	77	38	24	17	19	1.92
442614--442729	20	5.7	20	82	8	153	34	26	18	20	1.96
442575--442730	40	3.8	40	80	5	170	37	25	17	18	1.93
443112--443182	33	2.2	33	92	0	115	11	22	18	47	1.80
443281--443337	14	3.7	14	75	20	60	43	22	24	8	1.81
443273--443353	33	2.5	33	95	0	144	46	22	22	8	1.78
443349--443432	19	4.7	19	81	14	115	10	22	21	45	1.82
443390--443446	14	3.7	14	75	20	60	8	24	22	43	1.81
443371--443454	33	2.5	33	100	0	168	9	23	20	46	1.80
445152--445620	93	5.1	93	98	0	913	21	12	18	46	1.83
445667--445794	19	7.3	19	73	17	116	45	28	17	8	1.78
445703--445794	33	2.8	32	90	6	141	45	28	18	7	1.76
445790--445910	19	6.6	19	80	10	135	11	19	23	45	1.83
447836--447871	14	2.6	14	95	0	63	33	0	22	44	1.53
447978--448075	19	5.4	19	84	13	143	45	17	22	14	1.84
447978--448094	53	2.2	53	96	1	218	43	17	24	13	1.86
448084--448284	19	11.7	19	73	21	185	14	21	18	44	1.86
448090--448298	33	6.2	33	75	16	214	13	22	18	45	1.85
448084--448253	52	3.3	52	95	2	306	14	22	17	44	1.85
450777--450823	24	2.0	24	87	8	69	38	21	14	25	1.92
451504--451773	20	13.5	20	87	1	290	20	17	25	37	1.94
451760--451842	21	4.0	21	73	6	78	25	16	24	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451740--451838	42	2.4	43	77	11	100	21	18	23	37	1.94
455148--455236	31	2.8	31	74	6	99	28	4	24	42	1.74
460341--460449	51	2.2	49	85	9	143	28	22	24	24	1.99
460473--460600	51	2.5	51	83	1	150	18	30	33	17	1.94
462551--462596	13	3.1	14	82	17	58	71	4	0	23	1.03
462764--462872	51	2.2	49	85	9	143	29	22	24	23	1.99
462764--462884	47	2.5	48	81	12	140	28	23	23	23	1.99
462896--463023	51	2.5	51	85	1	159	18	31	33	16	1.93
465183--465288	2	53.0	2	100	0	212	50	0	0	50	1.00
467013--467047	16	2.1	17	89	5	54	62	0	0	37	0.95
469428--469455	2	14.0	2	100	0	56	50	0	0	50	1.00
472405--472583	45	4.0	45	96	0	304	24	8	43	23	1.81
477588--477628	3	14.0	3	85	14	59	63	0	0	36	0.95
477588--477624	8	4.6	8	90	10	58	62	0	0	37	0.96
477758--478548	76	10.4	76	94	1	1361	35	20	20	23	1.96
477758--478548	381	2.1	380	96	1	1442	35	20	20	23	1.96
479216--479270	22	2.5	22	93	0	101	40	14	10	34	1.81
481801--482431	83	7.6	82	96	1	1039	38	23	12	25	1.91
491030--491070	3	14.0	3	80	14	50	63	0	0	36	0.95
491468--491560	45	2.1	45	95	0	168	26	8	45	19	1.79
492792--492936	72	2.0	72	100	0	290	28	13	26	30	1.94
494773--494876	54	1.9	54	98	0	199	41	22	6	29	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
498125--498170	19	2.4	19	96	0	83	15	28	8	47	1.74
503265--503313	23	2.1	23	84	0	62	36	2	24	36	1.67
503382--503974	126	4.7	127	92	5	994	20	24	21	32	1.97
503382--503974	249	2.4	251	92	4	1011	20	24	21	32	1.97
504363--504463	34	3.2	32	79	13	118	35	4	3	55	1.40
504363--504464	29	3.4	29	80	9	91	36	4	3	54	1.40
504955--505060	40	2.6	41	90	3	160	22	22	35	18	1.95
504955--505062	21	5.2	21	80	4	130	22	24	35	18	1.96
505071--505118	21	2.3	21	88	0	69	20	12	41	25	1.87
506817--506885	31	2.2	33	79	10	81	56	0	0	43	0.99
506809--506890	32	2.5	32	82	9	94	56	0	0	43	0.99
506793--506896	49	2.1	49	79	16	108	59	0	0	39	1.04
506839--506910	32	2.4	31	81	9	85	62	1	0	36	1.04
508399--508423	13	1.9	13	100	0	50	48	0	0	52	1.00
509682--509726	19	2.4	19	88	0	63	37	11	17	33	1.85
509716--509756	21	2.0	21	85	0	55	48	17	14	19	1.81
511563--511600	15	2.5	15	95	0	67	44	13	21	21	1.85
512731--512810	23	3.4	24	81	6	92	27	23	25	23	2.00
512926--512985	23	2.6	23	86	0	93	30	25	25	20	1.99
515077--515114	15	2.4	16	95	4	69	36	0	10	52	1.36
515077--515114	8	4.9	8	93	6	69	36	0	10	52	1.36
515778--515818	16	2.6	16	88	7	57	31	0	2	65	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
515919--515970	2	26.0	2	100	0	104	50	0	0	50	1.00
516430--516487	30	1.9	31	92	3	100	41	6	8	43	1.62
516508--516711	80	2.6	79	85	9	294	53	14	0	31	1.41
516619--516772	46	3.2	46	72	20	120	51	13	0	34	1.41
516692--516772	21	3.6	22	72	19	78	49	12	0	38	1.41
516714--516889	79	2.2	80	77	10	184	52	11	0	36	1.38
516646--516855	98	2.1	99	80	15	238	51	12	0	36	1.40
516536--516939	129	3.2	128	78	10	429	52	12	0	34	1.39
516758--516939	79	2.3	76	80	13	192	53	9	0	36	1.34
516823--517355	52	10.7	52	72	19	315	51	11	0	35	1.43

Tables:   1   2   3   4   5   6   7